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Thermobifida fusca YX (tfus0)
Gene : AAZ55012.1
DDBJ      :             helix-turn-helix motif
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  14/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1c.82.1
:284 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->53 1praA PDBj 3e-04 40.0 %
:RPS:PDB   7->98 2ao9D PDBj 1e-09 7.6 %
:RPS:SCOP  7->85 1xwrA1  a.35.1.9 * 7e-11 19.7 %
:RPS:SCOP  138->266 1euhA  c.82.1.1 * 6e-04 15.5 %
:HMM:SCOP  9->79 2bnmA1 a.35.1.3 * 1.5e-09 25.4 %
:HMM:PFM   18->69 PF01381 * HTH_3 1.1e-12 39.2 51/55  
:HMM:PFM   153->234 PF04928 * PAP_central 0.00082 23.2 82/254  
:BLT:SWISS 14->53 RPC1_BP434 8e-04 40.0 %
:BLT:SWISS 30->89 URE2_CLOTH 5e-04 35.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55012.1 GT:GENE AAZ55012.1 GT:PRODUCT helix-turn-helix motif GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(1142886..1143740) GB:FROM 1142886 GB:TO 1143740 GB:DIRECTION - GB:PRODUCT helix-turn-helix motif GB:PROTEIN_ID AAZ55012.1 GB:DB_XREF GI:71915110 InterPro:IPR001387 LENGTH 284 SQ:AASEQ MQRSYSPTIRRRRISAQLRKFRKQKGLSAAAVGEKLGWPQQKISKIESGEQKRIPAAELDALLEVYGVTDPQIRESLHECARLAKERGWWTRYKDAFPSGLPDFESEASVIRSYECQVIPGILQTPDYADAIFRAYKLREDKEIDRLVKARMERQNILNRVDPPHFMTIIDEAALHRLVGSVEVMRTQLRHLTHMASRHNIDIYVLPFKAGAHAATTGSFMIMDFPDPMDNSIVYVDTPTSILYIEDEEEVREFNVMFSRTQSAALSPTLSMDLVKKVIKSLEE GT:EXON 1|1-284:0| BL:SWS:NREP 2 BL:SWS:REP 14->53|RPC1_BP434|8e-04|40.0|40/100| BL:SWS:REP 30->89|URE2_CLOTH|5e-04|35.0|60/122| BL:PDB:NREP 1 BL:PDB:REP 14->53|1praA|3e-04|40.0|40/69| RP:PDB:NREP 1 RP:PDB:REP 7->98|2ao9D|1e-09|7.6|92/107| HM:PFM:NREP 2 HM:PFM:REP 18->69|PF01381|1.1e-12|39.2|51/55|HTH_3| HM:PFM:REP 153->234|PF04928|0.00082|23.2|82/254|PAP_central| RP:SCP:NREP 2 RP:SCP:REP 7->85|1xwrA1|7e-11|19.7|76/79|a.35.1.9| RP:SCP:REP 138->266|1euhA|6e-04|15.5|116/474|c.82.1.1| HM:SCP:REP 9->79|2bnmA1|1.5e-09|25.4|71/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 215 OP:NHOMOORG 14 OP:PATTERN -------------------------------------------------------------------- ----6-------------------------------C----557----------------JK--N9QPRID---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 206 STR:RPRED 72.5 SQ:SECSTR HHTTccHHHHHHHHHHHHHHHcccccccHHHHHHHHTccHHHHHHHHHHcHHHHHHHHHHHHHHHHTTHHHHHHHHHcccccHHHHHHHHHHTTccccHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHTTcccccHHHHHHHHHHHTTccHHHHHHHHGGGccccccccHHHHHHHHHHHHHHHH############################################################################## DISOP:02AL 1-6, 8-9, 282-284| PSIPRED ccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHcccccHHHHHHHHccEEEEEEEccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEcHHHEEEcccHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcc //