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Thermobifida fusca YX (tfus0)
Gene : AAZ55065.1
DDBJ      :             DNA polymerase III, epsilon subunit
Swiss-Prot:             

Homologs  Archaea  27/68 : Bacteria  871/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.2.9c.55.3d.15.2d.226.1
:590 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   60->204 2p1jB PDBj 1e-13 32.4 %
:BLT:PDB   237->326 1yd6D PDBj 6e-12 39.8 %
:RPS:PDB   59->204 3cg7B PDBj 6e-20 11.6 %
:RPS:PDB   252->299 3egaA PDBj 2e-05 18.8 %
:RPS:PDB   434->468 1e52A PDBj 3e-04 28.6 %
:RPS:SCOP  59->204 2f96A1  c.55.3.5 * 1e-25 29.1 %
:RPS:SCOP  251->330 1ln0A  d.226.1.1 * 5e-17 15.0 %
:RPS:SCOP  443->511 1oeyJ  d.15.2.2 * 4e-04 16.2 %
:HMM:SCOP  36->222 2f96A1 c.55.3.5 * 2e-55 45.6 %
:HMM:SCOP  249->333 1mk0A_ d.226.1.1 * 1e-14 28.2 %
:HMM:SCOP  422->477 1e52A_ a.2.9.1 * 4.2e-05 26.8 %
:RPS:PFM   60->204 PF00929 * Exonuc_X-T 2e-14 40.7 %
:RPS:PFM   251->327 PF01541 * GIY-YIG 5e-06 33.8 %
:HMM:PFM   48->208 PF00929 * Exonuc_X-T 1.8e-35 36.9 157/165  
:HMM:PFM   251->326 PF01541 * GIY-YIG 3.8e-10 26.3 76/80  
:HMM:PFM   439->468 PF02151 * UVR 1.4e-06 30.0 30/36  
:BLT:SWISS 64->566 Y2191_MYCTU 2e-76 37.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55065.1 GT:GENE AAZ55065.1 GT:PRODUCT DNA polymerase III, epsilon subunit GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(1201754..1203526) GB:FROM 1201754 GB:TO 1203526 GB:DIRECTION - GB:PRODUCT DNA polymerase III, epsilon subunit GB:PROTEIN_ID AAZ55065.1 GB:DB_XREF GI:71915163 InterPro:IPR000305 InterPro:IPR006054 InterPro:IPR006055 LENGTH 590 SQ:AASEQ MLFWENRVPLLGGPPPLAGPYPGGVTVPKDLVQGSFDDLGRPLTDVTFVVVDVETTGTHPATAALIEVGAVRLRDGQVLDEFTTLVNPHAPVPASITLLTGITTAMVESAPSPAAALSAFLDFAGFRPGTVLVAHNAPFDVRFLKAACARHGIPWPSPAVLDTLQLARRLVPRGEVRNHRLDTLARVFGAHPPAHRALDDARATADVLRGLVGRLRARGVDTWEELRAFRSPVTSGQRSKRHLADGIPEAPGVYVFEDASGDPLYVGKSVNLRARVRSYFTAAEQRGRIKEMVGRAVRVQPIVCATAVEAEVRELRLIAARKPPYNRRSRHPERAPWLVITAEEFPRLAVVRQVGDNYLGALGPFSSSRTALLARDALHQAFPVRQCTHRITPPRPDAACALAEMGRCGAPCTGAQSAAEYAAHVQAVAQAMTGDVSAVVAALTARIDTLARELRYEEAALHRDRLSAFLAAAVRTQRVRALSAVPHLVAARPAGADWEVCVVRYGRLAGSARLRPGADPHTLLRTLVRTAESVPPPAGALPRADAAETECLLRWLEAPDVRLLEVEGSWVSPVGGAERYRQWIYRHTPA GT:EXON 1|1-590:0| BL:SWS:NREP 1 BL:SWS:REP 64->566|Y2191_MYCTU|2e-76|37.1|496/645| SEG 9->24|pllggppplagpypgg| SEG 44->58|tdvtfvvvdvettgt| SEG 110->124|apspaaalsafldfa| SEG 205->221|advlrglvgrlrargvd| SEG 415->431|aqsaaeyaahvqavaqa| BL:PDB:NREP 2 BL:PDB:REP 60->204|2p1jB|1e-13|32.4|139/171| BL:PDB:REP 237->326|1yd6D|6e-12|39.8|88/96| RP:PDB:NREP 3 RP:PDB:REP 59->204|3cg7B|6e-20|11.6|146/295| RP:PDB:REP 252->299|3egaA|2e-05|18.8|48/214| RP:PDB:REP 434->468|1e52A|3e-04|28.6|35/56| RP:PFM:NREP 2 RP:PFM:REP 60->204|PF00929|2e-14|40.7|140/163|Exonuc_X-T| RP:PFM:REP 251->327|PF01541|5e-06|33.8|77/80|GIY-YIG| HM:PFM:NREP 3 HM:PFM:REP 48->208|PF00929|1.8e-35|36.9|157/165|Exonuc_X-T| HM:PFM:REP 251->326|PF01541|3.8e-10|26.3|76/80|GIY-YIG| HM:PFM:REP 439->468|PF02151|1.4e-06|30.0|30/36|UVR| GO:PFM:NREP 3 GO:PFM GO:0004518|"GO:nuclease activity"|PF01541|IPR000305| GO:PFM GO:0005622|"GO:intracellular"|PF01541|IPR000305| GO:PFM GO:0006281|"GO:DNA repair"|PF01541|IPR000305| RP:SCP:NREP 3 RP:SCP:REP 59->204|2f96A1|1e-25|29.1|141/202|c.55.3.5| RP:SCP:REP 251->330|1ln0A|5e-17|15.0|80/92|d.226.1.1| RP:SCP:REP 443->511|1oeyJ|4e-04|16.2|68/105|d.15.2.2| HM:SCP:REP 36->222|2f96A1|2e-55|45.6|182/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 249->333|1mk0A_|1e-14|28.2|85/97|d.226.1.1|1/1|GIY-YIG endonuclease| HM:SCP:REP 422->477|1e52A_|4.2e-05|26.8|56/56|a.2.9.1|1/1|C-terminal UvrC-binding domain of UvrB| OP:NHOMO 1458 OP:NHOMOORG 900 OP:PATTERN ------------------------11111111111---1111111111-1111-------------11 1112111111112222222-22112222222112222222222223221111111111112222222111311222222221211122111111112--22222312121222222222211111111212111222222211132111111111111111111112111111111111111112211111333444443443444444333333444333243344444433222222222222222222223333443333344334422333333323322222222222222222222222222222222223322222223333333333232224422224322233312331321212222221223121111111111111111-1111111111111111-1111211111111111111111111111121222221221111111111111121111---------112211111111111111111112222222212221111222222222233222221211122211123311113221222122222211234341111111111111111122212211112111111111111111111111111111111111112212211111121222212211122--11211------12111122222221222-2222222222222122222222111112222222222122222122222221-111111111111--11111111111111111111111111-111111111111112111111111211111111111111111111111111122222111111111111111-11111111111-11-1222-1-11-1-1---1----1111-11122122222-21-1 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 272 STR:RPRED 46.1 SQ:SECSTR ##########################################################ccccccEEEEEEEEETTTTEEEEEEEEccccccccHHHHHHHcccHHHHHTcccHHHHHHHHHHHHHccTTcEEEEEcccHHHHTHHHHHHHHTTccccGGGcEEEEHHHHHHHcccccccHHHHHHHHHTccccTTcHHHHHHHH################################HHHHHHHHT#cccccccEEEEcTTccEEcccccTTcccccccTTcccccTTcEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHccHHHcc#########################################################################################################cHHHHHHHHHHHHHHHHHHTTcHHHHTTHHHHHHH########################################################################################################################## DISOP:02AL 282-283, 588-590| PSIPRED ccEEEccccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccccEEEEEEEEEEccEEEEEEEEEEcccccccHHHHHcccccHHHHHccccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccHHHcccccccccccHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHccccccHHHHHHHHHcEEEEEEEcccHHHHHHHHHHHHHHcccccEEEccccccEEEEEEcccccEEEEEEEccccccEEEcccccHHHHHHHHHHHHHHcccEEcccccccccccccccHHHcccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEEEEEEccEEEccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHcccccEEEEEEcEEEEEEcHHHHHHHHHccccc //