[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermobifida fusca YX (tfus0)
Gene : AAZ55185.1
DDBJ      :             transcriptional regulator, PadR family
Swiss-Prot:             

Homologs  Archaea  18/68 : Bacteria  82/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5
:240 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   88->157 3f8cA PDBj 3e-08 37.1 %
:RPS:PDB   91->156 2co5B PDBj 2e-07 17.7 %
:RPS:SCOP  91->188 1yg2A  a.4.5.61 * 3e-13 27.3 %
:HMM:SCOP  71->177 1bm9A_ a.4.5.7 * 2.6e-24 39.3 %
:RPS:PFM   91->162 PF03551 * PadR 8e-10 47.2 %
:HMM:PFM   82->162 PF03551 * PadR 1.2e-22 40.7 81/86  
:BLT:SWISS 86->167 YQJI_SHIFL 2e-07 32.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55185.1 GT:GENE AAZ55185.1 GT:PRODUCT transcriptional regulator, PadR family GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(1338743..1339465) GB:FROM 1338743 GB:TO 1339465 GB:DIRECTION - GB:PRODUCT transcriptional regulator, PadR family GB:PROTEIN_ID AAZ55185.1 GB:DB_XREF GI:71915283 LENGTH 240 SQ:AASEQ MVAMAIPAGWRTVGPGSFFRRAAGCRARRHAGHHHGWHFAHHGGFPPPIPPGPWPPHGGPAFGGPRGPFGFHGPRGGRGMRARRGDVRTGILLLLAERPMSGYEIIKEGRERSNGVWRLSPGSVYPVLQQLESEGLVTLAATGVGRRRPYELTEQGHAYVAEHAAELTPPWESAAQEYEETHARHLELASLASQLTAAVAQVSQVGTDAQVERVKQLLVKARKSVYRILAEDDLSDDEEL GT:EXON 1|1-240:0| BL:SWS:NREP 1 BL:SWS:REP 86->167|YQJI_SHIFL|2e-07|32.1|81/207| SEG 18->85|ffrraagcrarrhaghhhgwhfahhggfpppippgpwpphggpafggprgpfgfhgprggrgmrarrg| SEG 229->239|laeddlsddee| BL:PDB:NREP 1 BL:PDB:REP 88->157|3f8cA|3e-08|37.1|70/103| RP:PDB:NREP 1 RP:PDB:REP 91->156|2co5B|2e-07|17.7|62/94| RP:PFM:NREP 1 RP:PFM:REP 91->162|PF03551|8e-10|47.2|72/84|PadR| HM:PFM:NREP 1 HM:PFM:REP 82->162|PF03551|1.2e-22|40.7|81/86|PadR| RP:SCP:NREP 1 RP:SCP:REP 91->188|1yg2A|3e-13|27.3|88/169|a.4.5.61| HM:SCP:REP 71->177|1bm9A_|2.6e-24|39.3|107/0|a.4.5.7|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 110 OP:NHOMOORG 100 OP:PATTERN 1----1--1111111---22-22---------------------1--1---1-----1-----1---- 1--12--1111---111----11111-----111111111-11111---22-22---1--1-1-1--1211-----------------------------------------------------------------------------1-----------------1--1------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------1-----------------11-------1--1-----1--1-------------------1-1------11-111--11---------------------1--1---1------------------------------------111--------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------111111111111-------------------------------------------------1------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 120 STR:RPRED 50.0 SQ:SECSTR #####################################################################################HHHHHHHHHHTTTEEEGGGHHHHHHHHHHHcccccHHHHHHHHHHHHHTTcEEEcEEccTTccEEEEcHHHcHHHHHHHHHHTcccccEccccccHHHHHHTTGGGccTTcEEEEHHHHH################################### DISOP:02AL 1-2, 39-83, 142-143, 234-240| PSIPRED ccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccEEcccccHHHHHHHHHHHcccEEEEEEcccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccccccccc //