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Thermobifida fusca YX (tfus0)
Gene : AAZ55234.1
DDBJ      :             Excinuclease ABC subunit B
Swiss-Prot:UVRB_THEFY   RecName: Full=UvrABC system protein B;         Short=Protein uvrB;AltName: Full=Excinuclease ABC subunit B;

Homologs  Archaea  27/68 : Bacteria  884/915 : Eukaryota  14/199 : Viruses  0/175   --->[See Alignment]
a.2.9c.37.1
:701 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->604 1t5lA PDBj 0.0 62.9 %
:RPS:PDB   11->604 1d9zA PDBj e-135 60.6 %
:RPS:PDB   644->695 1e52A PDBj 8e-09 25.0 %
:RPS:SCOP  60->344 2b2nA1  c.37.1.19 * 4e-68 21.5 %
:RPS:SCOP  424->595 1c4oA2  c.37.1.19 * 2e-23 66.9 %
:RPS:SCOP  653->694 1qojA  a.2.9.1 * 2e-09 28.6 %
:HMM:SCOP  11->423 1d9xA1 c.37.1.19 * 5.4e-133 44.8 %
:HMM:SCOP  422->611 2eyqA5 c.37.1.19 * 9.6e-34 32.0 %
:HMM:SCOP  641->696 1e52A_ a.2.9.1 * 1.2e-10 39.3 %
:RPS:PFM   26->129 PF04851 * ResIII 1e-15 40.4 %
:RPS:PFM   478->552 PF00271 * Helicase_C 2e-04 38.6 %
:RPS:PFM   560->603 PF12344 * UvrB 1e-10 63.6 %
:RPS:PFM   658->689 PF02151 * UVR 1e-04 59.4 %
:HMM:PFM   560->603 PF12344 * UvrB 5e-24 61.4 44/44  
:HMM:PFM   473->553 PF00271 * Helicase_C 6.2e-17 43.4 76/78  
:HMM:PFM   658->690 PF02151 * UVR 1.2e-12 45.5 33/36  
:HMM:PFM   25->127 PF04851 * ResIII 1.8e-11 25.2 103/184  
:BLT:SWISS 1->701 UVRB_THEFY 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55234.1 GT:GENE AAZ55234.1 GT:PRODUCT Excinuclease ABC subunit B GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 1397067..1399172 GB:FROM 1397067 GB:TO 1399172 GB:DIRECTION + GB:PRODUCT Excinuclease ABC subunit B GB:PROTEIN_ID AAZ55234.1 GB:DB_XREF GI:71915332 InterPro:IPR001410 InterPro:IPR001650 InterPro:IPR001943 InterPro:IPR004807 InterPro:IPR011545 LENGTH 701 SQ:AASEQ MRPVTDIQRTDRPFEVVTDMVPAGDQPAAIEELARRIQGGAADTVLLGATGTGKTATVAWLIERLQRPTLVIQPNKTLAAQFANELREMMPHNAVEYFVSYYDYYQPEAYVPQTDTYIEKDSSINEEVERLRHSATTALLTRRDTVVVASVSCIYGLGTPQEYVDRMATVEVGMEIDRDELLRRLVEMQYTRNDVAFTRGTFRVRGDTVEIIPVYDELAVRIEMFGDEIERLMTLHPITGEVLGESDRVYIFPASHYVAGPERMRKAIAGIQAELEERLAELEAAGKLLEAQRLRMRTTYDVEMLEQMGTCAGVENYSRHFDGRAPGSPPNTLLDYFPEDFLVVIDESHVTVPQIGGMYEGDAARKRTLVEHGFRLPSAMDNRPLTWDEFRERTGQTLYLSATPGPYELERVGGDVVEQVIRPTGLVDPEVIVKPTEGQIDDLVHEIRIRAERDERVLVTTLTKKMAEDLTDYLTDLGIRVRYLHSEIDTLRRVELLRELRVGVFDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARHVSGQVHMYADTVTDAMAAAIEETNRRRAKQLAYNAEHGIDPKPLRKKIADILDSLAREDADTAELLARSRGEKRGTPTPRSGALSGPDRVAEQAKNLPREELAALVEQLTEQMHQAAADLQFELAARLRDEIKELKRELRGMEEAGIG GT:EXON 1|1-701:0| SW:ID UVRB_THEFY SW:DE RecName: Full=UvrABC system protein B; Short=Protein uvrB;AltName: Full=Excinuclease ABC subunit B; SW:GN Name=uvrB; OrderedLocusNames=Tfu_1196; SW:KW ATP-binding; Complete proteome; Cytoplasm; DNA damage; DNA excision;DNA repair; Excision nuclease; Nucleotide-binding; SOS response. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->701|UVRB_THEFY|0.0|100.0|701/701| GO:SWS:NREP 8 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA excision| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0004518|"GO:nuclease activity"|Excision nuclease| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0009432|"GO:SOS response"|SOS response| SEG 44->59|tvllgatgtgktatva| SEG 273->291|aeleerlaeleaagkllea| SEG 491->502|lrrvellrelrv| BL:PDB:NREP 1 BL:PDB:REP 14->604|1t5lA|0.0|62.9|590/595| RP:PDB:NREP 2 RP:PDB:REP 11->604|1d9zA|e-135|60.6|589/590| RP:PDB:REP 644->695|1e52A|8e-09|25.0|52/56| RP:PFM:NREP 4 RP:PFM:REP 26->129|PF04851|1e-15|40.4|104/177|ResIII| RP:PFM:REP 478->552|PF00271|2e-04|38.6|70/76|Helicase_C| RP:PFM:REP 560->603|PF12344|1e-10|63.6|44/44|UvrB| RP:PFM:REP 658->689|PF02151|1e-04|59.4|32/36|UVR| HM:PFM:NREP 4 HM:PFM:REP 560->603|PF12344|5e-24|61.4|44/44|UvrB| HM:PFM:REP 473->553|PF00271|6.2e-17|43.4|76/78|Helicase_C| HM:PFM:REP 658->690|PF02151|1.2e-12|45.5|33/36|UVR| HM:PFM:REP 25->127|PF04851|1.8e-11|25.2|103/184|ResIII| GO:PFM:NREP 9 GO:PFM GO:0003677|"GO:DNA binding"|PF04851|IPR006935| GO:PFM GO:0005524|"GO:ATP binding"|PF04851|IPR006935| GO:PFM GO:0016787|"GO:hydrolase activity"|PF04851|IPR006935| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| GO:PFM GO:0003677|"GO:DNA binding"|PF02151|IPR001943| GO:PFM GO:0004518|"GO:nuclease activity"|PF02151|IPR001943| GO:PFM GO:0006289|"GO:nucleotide-excision repair"|PF02151|IPR001943| RP:SCP:NREP 3 RP:SCP:REP 60->344|2b2nA1|4e-68|21.5|247/308|c.37.1.19| RP:SCP:REP 424->595|1c4oA2|2e-23|66.9|172/174|c.37.1.19| RP:SCP:REP 653->694|1qojA|2e-09|28.6|42/46|a.2.9.1| HM:SCP:REP 11->423|1d9xA1|5.4e-133|44.8|411/413|c.37.1.19|1/2|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 422->611|2eyqA5|9.6e-34|32.0|181/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 641->696|1e52A_|1.2e-10|39.3|56/56|a.2.9.1|1/1|C-terminal UvrC-binding domain of UvrB| OP:NHOMO 1139 OP:NHOMOORG 925 OP:PATTERN ------------------------11111111111---1111111111-1111-------------11 1212111111121111211-11112111111212221222111111111111111112111221221111211112222211111211111111111--1111111111111111111111111111111111111111111111121221211122111222111122211121111211111111111122222222222222222221222222222222221111112212211111212221111121222211112222222122221112222222222111111111111112222222222222132221222112221111111121211222222222112121222222122122221111111111112111111111111111111111111111-1111111111211111111111111111111211111111111111111111111111---------11111111111111111111122111111111111111111211111-111111111111111111111111211111111111111111111112411111111111122122121211112121111111111111111111111111111111122111111211111211111121111--11111------11111111111111111-1111111111111111111111111111111111111111111211111111-211111111111--1111111111112121111111111-111111111111111222222222222222122211111111121111-111111111111111111111111-1111222211111111111111-1-11111111111111111111111111211111 ------------------------------------------------------------------------------------------------------------2--------------------------------------------------1---1---------111--17111--1------1-----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 695 STR:RPRED 99.1 SQ:SECSTR EETTTEEEETcccccccccccccTTHHHHHHHHHHHHHTTccEEEEEEcTTccHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHccccEEEEEccTTcccccccEETTTTEEccccccccTHHHHHHHHHHHHTTTcccEEEEEcGGGGccccccTTTccccEEEEccccccTTTHHHHTTTTTcccccccccccccccccTTccccEEcccTTcccccEEEccccccEEEcccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccTTcccccHHHHHHHHHHHHTccccccGGGGHHHHHTccTTcccccGGGccccccEEEETTHHHHHHHHHTHHHHHHHHHHHHHHTTcccGGGTTcccccHHHHHTTcccEEEEcccccHHHHTTcccEEEEEcccTTcccccEEEEEccTTHHHHHHHHHHHHHTTTcEEEEEcccHHHHHHHHHHHHTTcccccccccccccHHHHHHHHHHTTTcccccEEcccccTTcccccEEEEEETTTTcccGGGcHHHHHHHHGGGcccTTcEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHTTcccccccccccccccccccccccTTGGGcccHHHHHccccHHHHHHHHHHHTHHHHHHTHHHHccHHHHHHHHHHHHHHHTTcHHHHHHHHHHccTTccEEHHH###### DISOP:02AL 1-11, 601-634, 645-658, 696-698, 700-701| PSIPRED ccccccccccccccccccccccccccHHHHHHHHHHHHcccccEEEEccccHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHcccccEEEcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEHHHHcccccHHHHHHcEEEEEEcccccHHHHHHHHHHHccEEccccccccEEEEEccEEEEEcccccccEEEEEEccEEEEEEEEEcccccEEccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccHHHHHHHHHccccccHHHHHHHHcccccccccHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccEEEEEEEccHHHHHHHHHHHHHHccccccccccEEEEEcHHHHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHHHccccEEEEEccHHHHccccccccEEEEEcccccccccccHHHEEEEEHHEEccccEEEEEEEcccHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccc //