[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermobifida fusca YX (tfus0)
Gene : AAZ55239.1
DDBJ      :             tyrosine recombinase XerD
Swiss-Prot:             

Homologs  Archaea  18/68 : Bacteria  745/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.60.9d.163.1
:321 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   12->291 1a0pA PDBj 8e-32 38.6 %
:RPS:PDB   8->288 5crxB PDBj 1e-36 12.8 %
:RPS:SCOP  8->310 1p7dA  d.163.1.1 * 2e-23 18.4 %
:HMM:SCOP  7->110 1a0pA1 a.60.9.1 * 2.8e-17 37.8 %
:HMM:SCOP  116->315 4crxA2 d.163.1.1 * 2.7e-55 44.2 %
:RPS:PFM   15->100 PF02899 * Phage_integr_N 8e-12 48.1 %
:RPS:PFM   127->291 PF00589 * Phage_integrase 7e-17 49.3 %
:HMM:PFM   122->302 PF00589 * Phage_integrase 5.6e-44 38.1 168/173  
:HMM:PFM   13->100 PF02899 * Phage_integr_N 4e-24 43.4 83/84  
:BLT:SWISS 15->317 XERD_CORGL 2e-75 54.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55239.1 GT:GENE AAZ55239.1 GT:PRODUCT tyrosine recombinase XerD GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 1403584..1404549 GB:FROM 1403584 GB:TO 1404549 GB:DIRECTION + GB:PRODUCT tyrosine recombinase XerD GB:PROTEIN_ID AAZ55239.1 GB:DB_XREF GI:71915337 InterPro:IPR011932 LENGTH 321 SQ:AASEQ MPEQASRLHTAVRGYLDHLTVERGLAANTLQSYRRDLNRYLDFLTARGITDLRDVRADDVASFLRTLREGDAHHRPLGANSAGRAVIAVRGLHRFALREGLTAHDPAHEVRPPALQRRLPKAITVAQVEALLAAADIGGGPRALRDRALIELLYGTGARISEVVGLDVDDVTRLRPDPHADTEVAAVRFRGKGGKERIVPVGRYARTAVDAYLVRARPGLAAAGRGSSALFLNARGGRLTRQGAWAVLHAAAERAGLRDVSPHTLRHSFATHLIDGGADVRVVQELLGHASVTTTQVYTLVTVDRLREVYAAAHPRARVSR GT:EXON 1|1-321:0| BL:SWS:NREP 1 BL:SWS:REP 15->317|XERD_CORGL|2e-75|54.3|291/304| SEG 215->230|rarpglaaagrgssal| SEG 292->303|vtttqvytlvtv| BL:PDB:NREP 1 BL:PDB:REP 12->291|1a0pA|8e-32|38.6|246/271| RP:PDB:NREP 1 RP:PDB:REP 8->288|5crxB|1e-36|12.8|273/296| RP:PFM:NREP 2 RP:PFM:REP 15->100|PF02899|8e-12|48.1|81/84|Phage_integr_N| RP:PFM:REP 127->291|PF00589|7e-17|49.3|146/168|Phage_integrase| HM:PFM:NREP 2 HM:PFM:REP 122->302|PF00589|5.6e-44|38.1|168/173|Phage_integrase| HM:PFM:REP 13->100|PF02899|4e-24|43.4|83/84|Phage_integr_N| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF02899|IPR004107| GO:PFM GO:0015074|"GO:DNA integration"|PF02899|IPR004107| GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 1 RP:SCP:REP 8->310|1p7dA|2e-23|18.4|272/280|d.163.1.1| HM:SCP:REP 7->110|1a0pA1|2.8e-17|37.8|98/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 116->315|4crxA2|2.7e-55|44.2|190/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 1819 OP:NHOMOORG 764 OP:PATTERN --1--1----------1---------------111---------1-1-------1111111111---- 22C2422222222222322-23223222222284253312225412222221322242223342233---222222652222----11233222222--32516332212222222222222222222222222322221123521315--11----------2--1411--------------2-122222222222222322322232222222225548234222222322222222222222222222222222221322221122222222-----------------------------------------------37332422232333221111222123--21346436624132222243-2225522222222223223222323222222222222-322232222B22222322682224222226222222322222222226222222222222222222222111222222212222-223322222722322223333223B22222222222B4222234332223532222522222-2222222224B222252-224234222222242222322222223-211--------1-11--11212-16523244--22222233222222222223222--23222------22442323333333323-322333333233333333222282BD32222232222222223432233322-222222222222---2------1--2222-2222222222122222223222222222222332323333255722222222222226222222223222222222222222--22222222--------222-------------------------11-11-2---262 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 311 STR:RPRED 96.9 SQ:SECSTR #######HHHHHHHHHHHHHTGGGccHHHHHHHHHHHHHHHHHHHHTTccccccccHHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTTccccGGGcHHHHHHHHHHHHHHHHTcccHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHcccHHHHTTccGGGEEEcEcTTccEEEEEEEETTEEEEEEEEEEccHHHHHHHHHHHccccccTTccccccccccccHHHHHHHHHHHHHHHHccccccccccccTTHHHHHHHHHHHTTTccHHHHHHHHccccTHHHHHHHTTcGGGcHHHHHHGGTTTc### DISOP:02AL 1-5, 317-321| PSIPRED cccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccHHHcccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHcccHHHHccccccEEEEccEEEEEEEccccEEEEEEccHHHHHHHHHHHHHHHHHccccccccccEEEccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHcccccccc //