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Thermobifida fusca YX (tfus0)
Gene : AAZ55372.1
DDBJ      :             RNA polymerase sigma factor
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  851/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13b.52.2
:308 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   86->248 1iw7F PDBj 1e-08 26.9 %
:BLT:PDB   248->286 2q1zA PDBj 4e-04 43.6 %
:RPS:PDB   86->291 3dxjF PDBj 7e-19 21.4 %
:RPS:SCOP  86->199 1aw8.1  b.52.2.1 * 5e-21 12.6 %
:RPS:SCOP  252->291 1ku3A  a.4.13.2 * 7e-08 32.5 %
:HMM:SCOP  76->159 1iw7F3 a.177.1.1 * 3.2e-26 33.3 %
:HMM:SCOP  162->239 1rp3A1 a.4.13.1 * 8.1e-16 40.3 %
:HMM:SCOP  222->308 1iw7F2 a.4.13.2 * 3.5e-14 36.8 %
:RPS:PFM   89->154 PF04542 * Sigma70_r2 2e-06 34.8 %
:RPS:PFM   251->288 PF08281 * Sigma70_r4_2 1e-04 44.7 %
:HMM:PFM   89->158 PF04542 * Sigma70_r2 2.6e-20 38.6 70/71  
:HMM:PFM   255->304 PF04545 * Sigma70_r4 2.7e-19 44.0 50/50  
:HMM:PFM   168->235 PF04539 * Sigma70_r3 1.5e-15 38.5 65/78  
:BLT:SWISS 63->291 RPOF_STRAU 1e-36 37.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55372.1 GT:GENE AAZ55372.1 GT:PRODUCT RNA polymerase sigma factor GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(1544432..1545358) GB:FROM 1544432 GB:TO 1545358 GB:DIRECTION - GB:PRODUCT RNA polymerase sigma factor GB:PROTEIN_ID AAZ55372.1 GB:DB_XREF GI:71915470 InterPro:IPR000943 LENGTH 308 SQ:AASEQ MPHREDSGTGPLTGAAVGAVLLNQARDEEVDMTTNSTTARRRSPAHRRGGVVRPPAPQSRPTGQAERLLAALADHQDDEETSARIRDELVRLYMPLVRREARRYRNRGEPMDDLYQVGMLGLMKAIKGFDPSYGKPFVAYLLPMVTGELKRHFRDTTWAVRVPRVHQERRSELNRVIAEFTQKHGRTPTTREIADALEMDLESAIELIDASSAYSALSLDTPFGDTEDESALGDTLGVADGDLETVVDKTSLKDALDRLPERERRVILLRFFGNKTQSEIAADVGLSQMHVSRLLSQTLRQLRRELLS GT:EXON 1|1-308:0| BL:SWS:NREP 1 BL:SWS:REP 63->291|RPOF_STRAU|1e-36|37.6|221/297| SEG 98->107|rrearryrnr| SEG 210->219|assaysalsl| SEG 292->307|srllsqtlrqlrrell| BL:PDB:NREP 2 BL:PDB:REP 86->248|1iw7F|1e-08|26.9|160/345| BL:PDB:REP 248->286|2q1zA|4e-04|43.6|39/176| RP:PDB:NREP 1 RP:PDB:REP 86->291|3dxjF|7e-19|21.4|206/349| RP:PFM:NREP 2 RP:PFM:REP 89->154|PF04542|2e-06|34.8|66/70|Sigma70_r2| RP:PFM:REP 251->288|PF08281|1e-04|44.7|38/54|Sigma70_r4_2| HM:PFM:NREP 3 HM:PFM:REP 89->158|PF04542|2.6e-20|38.6|70/71|Sigma70_r2| HM:PFM:REP 255->304|PF04545|2.7e-19|44.0|50/50|Sigma70_r4| HM:PFM:REP 168->235|PF04539|1.5e-15|38.5|65/78|Sigma70_r3| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 2 RP:SCP:REP 86->199|1aw8.1|5e-21|12.6|111/115|b.52.2.1| RP:SCP:REP 252->291|1ku3A|7e-08|32.5|40/61|a.4.13.2| HM:SCP:REP 76->159|1iw7F3|3.2e-26|33.3|84/184|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 162->239|1rp3A1|8.1e-16|40.3|77/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 222->308|1iw7F2|3.5e-14|36.8|87/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 1720 OP:NHOMOORG 862 OP:PATTERN -------------------------------------------------------------------- 2122712111122234433-3622333333334555745542235112322-222111--3361855DDC611111112112712234--111----------11-111-1111111-1-1111-1-111---1--3334311144B573443457743334433346674543355545334-----111335444444443444444445555444354432222222264222222222222222222221111111111111111111111111111111111111111111111111111111111111111111111545334443444343543333334452233343443354453344352-1113111111111111111121111111111111111-11112111111111111111111111111112111111111111111111111111111111111--11-11111111111111111211111122222322222222132223133213532113332221121121233231221211111112211222111311111111113332223221111112311111111111111111111111-1222313232123122222412222322223321-1221111111122221222222222222-222222222222212211211122223222222222222222222121122212111111111111121222222222113231111111111111111111111111232222222222222222211111111112222333333332211111111111111112222222211111111221----1---11-------11------21311-1---231 -------1------------------------------------------------------------------------------------------------------------------------------------------------------1----------------21-1B1----4--1-----1---1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 230 STR:RPRED 74.7 SQ:SECSTR #############################################################TccGGGEEEETTEEEEcEEETTTEHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHHHHHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHH################# DISOP:02AL 1-2, 31-42, 47-63, 307-308| PSIPRED ccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHcccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHcc //