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Thermobifida fusca YX (tfus0)
Gene : AAZ55398.1
DDBJ      :             helix-turn-helix motif
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  9/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1a.4.1
:406 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->72 1praA PDBj 1e-04 33.9 %
:RPS:PDB   1->97 2ao9A PDBj 6e-12 8.2 %
:RPS:SCOP  1->97 2ao9A1  a.4.1.17 * 2e-12 8.2 %
:HMM:SCOP  5->75 2bnmA1 a.35.1.3 * 3.4e-13 36.6 %
:RPS:PFM   14->69 PF01381 * HTH_3 3e-04 36.4 %
:HMM:PFM   15->69 PF01381 * HTH_3 3e-08 35.2 54/55  
:BLT:SWISS 9->88 RGHR_BACSU 3e-04 33.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55398.1 GT:GENE AAZ55398.1 GT:PRODUCT helix-turn-helix motif GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(1577211..1578431) GB:FROM 1577211 GB:TO 1578431 GB:DIRECTION - GB:PRODUCT helix-turn-helix motif GB:PROTEIN_ID AAZ55398.1 GB:DB_XREF GI:71915496 InterPro:IPR001387 LENGTH 406 SQ:AASEQ MSEGYQEASFGKRVQAIRERNGMTRATLGGLVGRSAEWVKSIEKGRLQMPRLDMLTQLAAALGCDLAELVGGKHPIIVAPYVKEAHPALLEIREALTSYPIGRDEEPATAAELAERVRHAWMVWHGSRANHRTRIAALLPPLLADLRYAARVHEGKERRSVLASLAEAYHLAQLFLSFQPAPDLVLLTGDRGMEAALEADNPRAIASAAWYMNHVFRDAGERHEARVELAMQAARLLDPEKDSDELARWGLLHLAVALSYAKVGRAGDAWRYWDIAYEAAQKLGRSYAHPYLIFGMGIVEGYAVTMHDDLMQGGKAVEAAAKVDLGLIPSATRRAFHIIETARGHWQRGEQAAVVHLLNKAHRESPETIRFNIFSRRAVSDMVSNPPSMLREDVDSLAQKLGVVAR GT:EXON 1|1-406:0| BL:SWS:NREP 1 BL:SWS:REP 9->88|RGHR_BACSU|3e-04|33.8|74/135| SEG 136->151|aallpplladlryaar| BL:PDB:NREP 1 BL:PDB:REP 9->72|1praA|1e-04|33.9|62/69| RP:PDB:NREP 1 RP:PDB:REP 1->97|2ao9A|6e-12|8.2|97/117| RP:PFM:NREP 1 RP:PFM:REP 14->69|PF01381|3e-04|36.4|55/55|HTH_3| HM:PFM:NREP 1 HM:PFM:REP 15->69|PF01381|3e-08|35.2|54/55|HTH_3| GO:PFM:NREP 1 GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF01381|IPR001387| RP:SCP:NREP 1 RP:SCP:REP 1->97|2ao9A1|2e-12|8.2|97/117|a.4.1.17| HM:SCP:REP 5->75|2bnmA1|3.4e-13|36.6|71/0|a.35.1.3|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 21 OP:NHOMOORG 9 OP:PATTERN -------------------------------------------------------------------- ----3-------------------1-----------1-----2-----------------63--12----2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 299 STR:RPRED 73.6 SQ:SECSTR ccHHHHHHHHHHHHHHHcccccccHHHHHHHHTccHHHHHHHHHHcHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHcccccHHHHHHHHHHTTcccHHccccHHHHHHHHHHHHHHHHGTTTcHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHTTcccccHHHHHHHccHHHHHHHHGGGccccccccHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHcTTccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHH########################################################################################################### DISOP:02AL 1-5| PSIPRED ccccccccHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHcccHHHHcccccccccccccccccccccHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccHHHHcHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHcHHHHHHHHHHHccccccccHHHHHHHHHHHHccc //