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Thermobifida fusca YX (tfus0)
Gene : AAZ55422.1
DDBJ      :             regulatory protein, MerR
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  282/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.6.1
:132 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->116 3gp4B PDBj 2e-15 33.3 %
:RPS:PDB   3->111 3d71A PDBj 9e-16 23.3 %
:RPS:SCOP  6->84 1q05A  a.6.1.3 * 1e-15 25.3 %
:HMM:SCOP  5->123 1q06A_ a.6.1.3 * 1.1e-29 40.3 %
:RPS:PFM   6->43 PF00376 * MerR 2e-05 64.9 %
:HMM:PFM   6->43 PF00376 * MerR 2.4e-17 60.5 38/38  
:HMM:PFM   48->111 PF09278 * MerR-DNA-bind 1.2e-08 23.4 64/65  
:BLT:SWISS 5->117 Y186_HAEIN 1e-19 35.4 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55422.1 GT:GENE AAZ55422.1 GT:PRODUCT regulatory protein, MerR GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 1604410..1604808 GB:FROM 1604410 GB:TO 1604808 GB:DIRECTION + GB:PRODUCT regulatory protein, MerR GB:PROTEIN_ID AAZ55422.1 GB:DB_XREF GI:71915520 InterPro:IPR000551 LENGTH 132 SQ:AASEQ MTDYYTPGEVARRHGLSLDTLRYYEREGLLAQVERSPAGHRRYRASDVEMLDLVRCLRDTDMPIARLREFAELVRAGDHTIPQRIEVLVEHDAQLTARIAELRRRQEAIRHKIDYYRGVLAENRSDTEEEGR GT:EXON 1|1-132:0| BL:SWS:NREP 1 BL:SWS:REP 5->117|Y186_HAEIN|1e-19|35.4|113/135| BL:PDB:NREP 1 BL:PDB:REP 9->116|3gp4B|2e-15|33.3|108/130| RP:PDB:NREP 1 RP:PDB:REP 3->111|3d71A|9e-16|23.3|103/277| RP:PFM:NREP 1 RP:PFM:REP 6->43|PF00376|2e-05|64.9|37/37|MerR| HM:PFM:NREP 2 HM:PFM:REP 6->43|PF00376|2.4e-17|60.5|38/38|MerR| HM:PFM:REP 48->111|PF09278|1.2e-08|23.4|64/65|MerR-DNA-bind| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00376|IPR000551| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00376|IPR000551| RP:SCP:NREP 1 RP:SCP:REP 6->84|1q05A|1e-15|25.3|79/122|a.6.1.3| HM:SCP:REP 5->123|1q06A_|1.1e-29|40.3|119/127|a.6.1.3|1/1|Putative DNA-binding domain| OP:NHOMO 440 OP:NHOMOORG 283 OP:PATTERN -------------------------------------------------------------------- ----3-----11111-----------------111124-1-11131-1------------133-2-255411111-----23--------------------------------------------------------------1-1-----------------------------------------1----1-----21----123-3-11121-1----11-55557346------------------1---5-22-2-1-45--33332-113441-1--1--2211111111111--------------11---1111---47---11-11-11222----1-----1---112-----1--1----1--------------1-1113---1-----------1--11--11131---11---4---32-21-1-11------1--------2----2-------------------------------------122222222221111111221111112221-----231-2-1--1111---1--1-1-1111111-1--1--------------1--------1-11-1---------1-1-----------------13--1-211-----1111-1-11-1-1----1------1-------1-----11-1111111-1111111111111111111--1---------------------1111---1------------------------------1----1-2-1111--------------211111-----111-2111--------------------1---1----------------2---------------------1-------------1------------------2 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------5---------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 116 STR:RPRED 87.9 SQ:SECSTR ##ccEEHHHHHHHHTccHHHHHHHHHTTccccEEcTTTccEEEcTTGGGHHHHHHHHHHTTccHHHHHHHTTccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTccHH############## DISOP:02AL 1-2, 122-132| PSIPRED ccccccHHHHHHHHcccHHHHHHHHHHcccccccccccccEEccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccc //