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Thermobifida fusca YX (tfus0)
Gene : AAZ55461.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  473/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1e.10.1
:339 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   43->120 2nxnB PDBj 4e-04 29.5 %
:BLT:PDB   103->280 1i6aA PDBj 2e-10 37.0 %
:RPS:PDB   16->125 1cy8A PDBj 2e-17 8.3 %
:RPS:PDB   107->251 2bjjX PDBj 4e-04 15.4 %
:RPS:SCOP  16->108 1cy0A  e.10.1.1 * 4e-12 10.3 %
:RPS:SCOP  90->280 1i69A  c.94.1.1 * 5e-19 28.7 %
:HMM:SCOP  1->111 1b9mA1 a.4.5.8 * 3e-21 35.2 %
:HMM:SCOP  86->306 1uthA_ c.94.1.1 * 1.7e-29 30.0 %
:RPS:PFM   16->61 PF00126 * HTH_1 6e-04 50.0 %
:RPS:PFM   88->248 PF03466 * LysR_substrate 2e-12 37.3 %
:HMM:PFM   86->282 PF03466 * LysR_substrate 1.7e-35 31.6 190/209  
:HMM:PFM   4->62 PF00126 * HTH_1 2.6e-15 42.4 59/60  
:BLT:SWISS 17->260 YCGK_BACSU 2e-17 27.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55461.1 GT:GENE AAZ55461.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(1647983..1649002) GB:FROM 1647983 GB:TO 1649002 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID AAZ55461.1 GB:DB_XREF GI:71915559 InterPro:IPR000847 LENGTH 339 SQ:AASEQ MDLTRLRLLVELRRLGTMTAVSEVTGMGTSAVSKHLAVLEREAGVRLLVPDGRRVRLTPAGRRLAEHARDILERVEAARAEMAGEGPPVGRINLVTFVSMTVPVILPAMEQLRQQHPGLEVRLIEHEPDQALDLLLSGEADLGLIYEYTLVPRRIPEGLTVHPVGREPLFLAEPTASNPSGATMTRERLRALADASWIANSRGSDDDELVLRMCADAGFRPQIRHRIDTLEALSAVVAAGWGVGLLPKLAASPPHPGVVHTPLGELAGERRISLVARTGAWAWRPLHVVAHAIHRAARHVLDPVASGFSEGAAADGSGAEDEPARGDSDPVRGFPHRGE GT:EXON 1|1-339:0| BL:SWS:NREP 1 BL:SWS:REP 17->260|YCGK_BACSU|2e-17|27.2|239/324| SEG 3->15|ltrlrllvelrrl| SEG 287->300|hvvahaihraarhv| SEG 305->322|asgfsegaaadgsgaede| BL:PDB:NREP 2 BL:PDB:REP 43->120|2nxnB|4e-04|29.5|78/139| BL:PDB:REP 103->280|1i6aA|2e-10|37.0|162/212| RP:PDB:NREP 2 RP:PDB:REP 16->125|1cy8A|2e-17|8.3|108/563| RP:PDB:REP 107->251|2bjjX|4e-04|15.4|143/692| RP:PFM:NREP 2 RP:PFM:REP 16->61|PF00126|6e-04|50.0|46/60|HTH_1| RP:PFM:REP 88->248|PF03466|2e-12|37.3|153/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 86->282|PF03466|1.7e-35|31.6|190/209|LysR_substrate| HM:PFM:REP 4->62|PF00126|2.6e-15|42.4|59/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 16->108|1cy0A|4e-12|10.3|87/534|e.10.1.1| RP:SCP:REP 90->280|1i69A|5e-19|28.7|178/206|c.94.1.1| HM:SCP:REP 1->111|1b9mA1|3e-21|35.2|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 86->306|1uthA_|1.7e-29|30.0|210/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 2208 OP:NHOMOORG 476 OP:PATTERN -------------------------------------------------------------------- 232-71-12231--432----11119-----113335CLN-3113-22-221988--3--212-55LAE77----112----3---------------------1---11--------------------------222-----1-1-13---1211-----11-1311--11-----1----111-----4252222222212222221244642221222---111111BA----------------------1--------11--------1-------------------------------------------------1-11-----------------------4--1--1------1--------1-----------41678-124522333333343245-33343D4725--9443573965327B----28223312444444444344222-2------------------------------114-14GC6KFJJOKGA6665CCHF666635MBJNSQK-1C9737632M9D2K71232---53---------1143--111----12221-2-223311133123311-------------------------43633111312222-111111221-11---21----2--------65454958886866677-8778856788868777774AEA662138586878888868767A45544451-423233323333---------1111-25573432211-1112--23342421--171AAFA9HCF6BCA93648----------4334333333333356466673331121---------------------------------------------------------4- --------------------------------------------------------------------------------------------------------------------------------------------------------------4-----------------------------5-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 265 STR:RPRED 78.2 SQ:SECSTR ###############HHHHHHHHHTTcccTTTHHHHHHHHHTTTTccEEEETTEEEEcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHHHccGGGTccccccTTcccEEEEEccHHHHHHHTccTTcEEEEEEccEEEEEGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGGGcTTccTTcEEEEEEcGGGcEEEcccEEEEEGGGccTTcTTcEEEEccTTcccEEEEEEEEHTT########################################################### DISOP:02AL 79-89, 303-332, 336-339| PSIPRED ccHHHHHHHHHHHHcccHHHHHHHHcccccHHHHHHHHHHHHHccEEEEEcccccEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEHHHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccEEEEEEEccccccccccccEEEEEEEcccEEEEEEccccccccccccccHHHHccccEEEccccccHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHccHHHHHHHHHHccccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEccccccc //