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Thermobifida fusca YX (tfus0)
Gene : AAZ55522.1
DDBJ      :             similar to TRAP-type C4-dicarboxylate transport system periplasmic component
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  9/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:431 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   63->249 2hzkD PDBj 1e-04 29.3 %
:RPS:PDB   64->389 2cexA PDBj 1e-12 15.9 %
:RPS:PFM   69->296 PF03480 * SBP_bac_7 8e-11 27.4 %
:HMM:PFM   69->358 PF03480 * SBP_bac_7 7.2e-24 21.5 275/286  
:BLT:SWISS 82->320 Y052_HAEIN 2e-04 20.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55522.1 GT:GENE AAZ55522.1 GT:PRODUCT similar to TRAP-type C4-dicarboxylate transport system periplasmic component GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 1715381..1716676 GB:FROM 1715381 GB:TO 1716676 GB:DIRECTION + GB:PRODUCT similar to TRAP-type C4-dicarboxylate transport system periplasmic component GB:PROTEIN_ID AAZ55522.1 GB:DB_XREF GI:71915620 LENGTH 431 SQ:AASEQ MANPHTSSLQPLKTAAVLSTVMLIAAGCAEDRGSGGSGGGGPSVDYGASKEEYAAALADMEPVTLTLQSTAPKGAATGRRFEEYAAAVEEWSDGKITFEIVFSNAIAPANEVDDALADGRLDIGSVMPSLEPAEFPANNVMWDVSFVGRQTPVDGLLQWHGAILETAAQEDALYEEFEARGMKLLLPAFHSGAIAYSCTSERADLDSLKGATIASQSRVQNGQVEALGMQPSTVNYAEMFESLERGVVDCALGTFTVAALNGYIPSAPYFVVDPEVGFGNAGGSIAISLATWESLPLAAQQLLYDRLDVLLQANYESTWDNIADSLTQVEENDGAVLPLAKDAREALAAYNEQALAEAANNSALPDSEAFVTALEQALEEWTAKVEQTAPGLDVGYDEFLEWHAAGYPDLQSYFDQLWSDAMQQRRPGSEA GT:EXON 1|1-431:0| BL:SWS:NREP 1 BL:SWS:REP 82->320|Y052_HAEIN|2e-04|20.7|222/328| SEG 33->41|gsggsgggg| SEG 345->364|ealaayneqalaeaannsal| BL:PDB:NREP 1 BL:PDB:REP 63->249|2hzkD|1e-04|29.3|164/328| RP:PDB:NREP 1 RP:PDB:REP 64->389|2cexA|1e-12|15.9|290/304| RP:PFM:NREP 1 RP:PFM:REP 69->296|PF03480|8e-11|27.4|215/284|SBP_bac_7| HM:PFM:NREP 1 HM:PFM:REP 69->358|PF03480|7.2e-24|21.5|275/286|SBP_bac_7| GO:PFM:NREP 2 GO:PFM GO:0006810|"GO:transport"|PF03480|IPR018389| GO:PFM GO:0030288|"GO:outer membrane-bounded periplasmic space"|PF03480|IPR018389| OP:NHOMO 10 OP:NHOMOORG 9 OP:PATTERN -------------------------------------------------------------------- -------1--------------------------------------------------------------2----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11-11--1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11--------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 308 STR:RPRED 71.5 SQ:SECSTR ##############################################################cEEEEEccccTTcHHHHHHHHHHHHHHHHTTTcEEEEEEcTTTTccHHHHHHHHHHTcccEEEEccGGGGGTcGGGGGGGcTTTcccHTTTcccHHHHHHHHHccHHHHHHHHHHHHTTcEEEEEEEEEEEEEEEEccccccGGGGTTcEEEEccHHHHHHHHHTTcEEEEccGGGHHHHHHTTcccEEEEEHHHHHHTTGGGTccEEEcccccEEEEEEEEEEEEHHHHTTccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcEEccccHH###################EccccHHHHHTTHHHHHHHHHHHHHHH########################################## DISOP:02AL 1-6, 32-40, 426-431| PSIPRED ccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHccEEEEEEEEccccccHHHHHHHHHHccEEEEEHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccEEEEEEEccccEEEEEccccccHHHHcccEEEEccHHHHHHHHHHcccEEEccHHHHHHHHHcccEEEEEccHHHHHHcccHHHccEEEEccccccccccEEEEEEHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccc //