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Thermobifida fusca YX (tfus0)
Gene : AAZ55577.1
DDBJ      :             AP endonuclease, family 1:Exodeoxyribonuclease III xth
Swiss-Prot:             

Homologs  Archaea  28/68 : Bacteria  759/915 : Eukaryota  101/199 : Viruses  0/175   --->[See Alignment]
d.151.1
:267 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   4->265 2jc5A PDBj 2e-73 52.6 %
:RPS:PDB   2->265 1e9nA PDBj 1e-43 32.9 %
:RPS:SCOP  2->266 1bixA  d.151.1.1 * 3e-84 33.2 %
:HMM:SCOP  4->266 1akoA_ d.151.1.1 * 6.4e-70 40.4 %
:HMM:PFM   6->264 PF03372 * Exo_endo_phos 1.8e-38 22.2 252/276  
:BLT:SWISS 10->264 EXOA_BACSU 3e-44 40.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55577.1 GT:GENE AAZ55577.1 GT:PRODUCT AP endonuclease, family 1:Exodeoxyribonuclease III xth GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(1776405..1777208) GB:FROM 1776405 GB:TO 1777208 GB:DIRECTION - GB:PRODUCT AP endonuclease, family 1:Exodeoxyribonuclease III xth GB:PROTEIN_ID AAZ55577.1 GB:DB_XREF GI:71915675 InterPro:IPR000097 InterPro:IPR004808 LENGTH 267 SQ:AASEQ MSSLVIATVNVNGLRAAARKGFVEWLAGTKADVVCLQETRAELDQLPPEVAEPDGWHVVLVPAATKGRAGVAVYSRMKPDAVRIGFGSAEFADSGRYVEADFGPVSVASLYLPSGQVGTPLQEEKERFMAEFLPYLVRRRTEVEAQGRELAVCGDWNIAHQEADLKNWRGNRKNSGFLPEERQWLSRVYEEAGYVDVVRALHPDQDGPYTWWSYRGRAFDNDAGWRIDLQVATPGLAARAQEAWVERAPSHDQRWSDHAPVTVVYAG GT:EXON 1|1-267:0| BL:SWS:NREP 1 BL:SWS:REP 10->264|EXOA_BACSU|3e-44|40.5|242/252| BL:PDB:NREP 1 BL:PDB:REP 4->265|2jc5A|2e-73|52.6|253/259| RP:PDB:NREP 1 RP:PDB:REP 2->265|1e9nA|1e-43|32.9|255/274| HM:PFM:NREP 1 HM:PFM:REP 6->264|PF03372|1.8e-38|22.2|252/276|Exo_endo_phos| RP:SCP:NREP 1 RP:SCP:REP 2->266|1bixA|3e-84|33.2|256/275|d.151.1.1| HM:SCP:REP 4->266|1akoA_|6.4e-70|40.4|255/268|d.151.1.1|1/1|DNase I-like| OP:NHOMO 1294 OP:NHOMOORG 888 OP:PATTERN ------1111111111-1-----1--------1-1---111112---1-1111--------111---- -11-222222222221111-12--1211111122222243-1112232221222222233111112222221111111111-----1111111111---212112223-2---------------11-111-1-11----------11-1111111111111111111111111111111111221----11-1111111-1-1-111-1----1111---11--11111111--------------------1211111121211221111111111111111111111111111111111111111111111111111111-1111111111111111---11111111--1--1111-1-1----1-11-1-1222432222233332223333322222222222-22222222332123323333333432222222323322222222222222222221121-111-1132222222221222111112232222222222222222222233222222223322322222223222232322222222222222222222222211111111111111-----1-111111211111111111111111111111--11122111122111111111111111111111111--21112------11111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111222221222111111111111111111111111122333322322333332221111111111111111111111113233333222222211111111111111111111-------------------------------------11 -1--111---11-11--------------------------------------------1-----------------------------1-2-211----11-111-21-2141111121111114121453-11111111113211-1-1--11-1121121111121112111212-G333213222-11112121- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 267 STR:RPRED 100.0 SQ:SECSTR cccEEEEEEEcccHHHHHHTTHHHHHHHHcccEEEEEcccccGGGccTHHHHcccccEEEEEccccccccEEEEEcccccEEEEccccGGGcccccEEEEEccccEEEEEEcccccGGGTTHHHHHHHHHHHHHHHHHHTHHHHHHHccEEEEEEccccccGGGccccGGGTTcTTccHHHHHHHHHHHHHTTcEEHHHHHcTTccccccEEccGGGTTTTTcEEccEEEEEcGGGGGGEEEEEEcHHHHTTccccccccEEEEEcc PSIPRED cccEEEEEEEccccccccHHHHHHHHHHccccEEEEEEEEccHHHccHHHHHccccEEEEEccccccccEEEEEEccccHHEEEccccccccccccEEEEEEccEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccHHHcccHHHHccccccccHHHHHHHHHHHHcccEEEHHHHccccccccEEcccccccccccccEEEEEEEEcHHHHHHHHEEEEEccccccccccccccEEEEEcc //