[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermobifida fusca YX (tfus0)
Gene : AAZ55640.1
DDBJ      :             putative xylose repressor
Swiss-Prot:             

Homologs  Archaea  16/68 : Bacteria  560/915 : Eukaryota  47/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.55.1
:417 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   14->408 1z05A PDBj 8e-34 26.7 %
:RPS:PDB   22->408 3bp8A PDBj 4e-41 23.2 %
:RPS:SCOP  22->82 1z05A1  a.4.5.63 * 3e-06 31.1 %
:RPS:SCOP  120->216 1woqA1  c.55.1.10 * 3e-14 28.9 %
:RPS:SCOP  222->404 1z05A2  c.55.1.10 * 2e-31 29.5 %
:HMM:SCOP  12->82 1z05A1 a.4.5.63 * 1.3e-17 45.1 %
:HMM:SCOP  83->407 1sz2A1 c.55.1.7 * 3.1e-41 35.3 %
:RPS:PFM   120->277 PF00480 * ROK 3e-25 45.4 %
:HMM:PFM   93->277 PF00480 * ROK 1.2e-35 36.3 171/179  
:HMM:PFM   24->61 PF09339 * HTH_IclR 4e-06 31.6 38/52  
:BLT:SWISS 14->403 XYLR_ANATD 1e-41 31.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55640.1 GT:GENE AAZ55640.1 GT:PRODUCT putative xylose repressor GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 1853339..1854592 GB:FROM 1853339 GB:TO 1854592 GB:DIRECTION + GB:PRODUCT putative xylose repressor GB:PROTEIN_ID AAZ55640.1 GB:DB_XREF GI:71915738 LENGTH 417 SQ:AASEQ MVGATEGPAGFQAVRETNLGIVLRTIRTSAPCSRAVVAASTGLTKATVSSLVAELIDRGLVCETGLVNERRVGRPGMMLTINGSTLVALGLEVNVDYLALAALDLLEREVLTRHVAFDARAAGPEECAKQLKTLLLETVADPLLRDRPLLGVSVAIPALVDVSSGTVTNAPNLGWRNFPLQQRLTELLADTPLAGAPVRVDNDANLGAVAEYRGGHLARTMDLVYLTGEVGIGAGVLMNGEPLRGASGFAGEVGHIPLLKDGPACACGQDGCLEALAGLDSILRRAVPDLVPEGPVRGSVVESLVAETVRRAESGDATAVQALEDAGEWLGRAAATLVNLLNPSAIILGGYFVPLSPWLLPSCREAMAAYSFAPNSGNCRIEPSTLGLSAAARGGAMALIDALDTGLLPLPPGSSAA GT:EXON 1|1-417:0| BL:SWS:NREP 1 BL:SWS:REP 14->403|XYLR_ANATD|1e-41|31.2|382/399| SEG 98->106|lalaaldll| BL:PDB:NREP 1 BL:PDB:REP 14->408|1z05A|8e-34|26.7|386/396| RP:PDB:NREP 1 RP:PDB:REP 22->408|3bp8A|4e-41|23.2|362/381| RP:PFM:NREP 1 RP:PFM:REP 120->277|PF00480|3e-25|45.4|152/181|ROK| HM:PFM:NREP 2 HM:PFM:REP 93->277|PF00480|1.2e-35|36.3|171/179|ROK| HM:PFM:REP 24->61|PF09339|4e-06|31.6|38/52|HTH_IclR| RP:SCP:NREP 3 RP:SCP:REP 22->82|1z05A1|3e-06|31.1|61/71|a.4.5.63| RP:SCP:REP 120->216|1woqA1|3e-14|28.9|90/129|c.55.1.10| RP:SCP:REP 222->404|1z05A2|2e-31|29.5|183/197|c.55.1.10| HM:SCP:REP 12->82|1z05A1|1.3e-17|45.1|71/0|a.4.5.63|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 83->407|1sz2A1|3.1e-41|35.3|295/0|c.55.1.7|1/1|Actin-like ATPase domain| OP:NHOMO 1378 OP:NHOMOORG 623 OP:PATTERN --1-1-----------111-11--1---111--------------11--------------111---- 234-H111111111-1111-12--141111112---23763123698172347671-8113584898EG94322277711112-1111224214-1---11----11313--------------1111121121121225511141111-111--11-----111112221------------3311146-312111111311131123353322112222142243332358122111111122211112112-3-11-2---2211121-2-111121111111111211233222231111111111111112111322122-161111111313221111113121-322--11--11511276521111123--------1------------11111111111-1111111125--94456628A923----112-3133-211111111111121-11----------------------------------------------1------1---------1--1--------1----1241----1-11-------------1---------------1-2121-11111111-2------------------------1--324------1211111--11111-1-11-1------1------53642325445555544-4555555454454555554565332223333333333333333533444433-333333313333-------------1--11111-2-------111----------11--------------1-11--111-1--22243333322233--11-11-----------11111111-111-1-------1------------1-------2451144555-12 --------------------------------------------------------------------------------------------------------------3111121111--11321113B1-114--11111111111-111111111-----------------------------------1111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 396 STR:RPRED 95.0 SQ:SECSTR #############HHHHHHHHHHHHHHHcccccHHHHHHHccccHHHHHHHHHHHHHTTcEccccEEEccTETEEEEEEEEcccEEEEEEEETTcccEEEEEEEcccEEEEEEEEEEEccccccccHHHHHHHHHHHHHHHTTTTccEEEEEEEEEccEEETTTTEEEEccccccccccTTTHHHHTTHHHHHccccEEEEEHHHHHHHHHHHccTTTTcccEEEEEEcccEEEEEEETTEEccccccccccGGGccccccccccccccccccTTTccHHHHHHHHHHTTTTTccccccccHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcGGGGGHHHHHHHHHHHHHHHccHHHHTTccEEEccccTTcGGGGHHHHHHHHHccTTHc######## DISOP:02AL 1-16, 63-78, 409-410, 412-417| PSIPRED ccccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccccccccccccEEEEEccccEEEEEEEEcccEEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEcccEEEccccEEEEccccccccccHHHHHHHHHHHcccccccEEEEEcHHHHHHHHHHHHccccccEEEEEEEccccEEEEEEccEEEccccccccEEEEEEEcccccccccccccEEHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEcccHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccccHHHHHHHHHHHHHHHccccccccccccc //