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Thermobifida fusca YX (tfus0)
Gene : AAZ55644.1
DDBJ      :             ABC-type sugar transport system periplasmic component
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  25/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:557 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   218->444 1y3nA PDBj 2e-07 28.5 %
:RPS:PDB   133->383 3d4cA PDBj 8e-16 16.6 %
:RPS:SCOP  123->553 1j1nA  c.94.1.1 * 7e-26 11.4 %
:HMM:SCOP  36->555 1y3nA1 c.94.1.1 * 4.5e-63 20.9 %
:RPS:PFM   132->371 PF01547 * SBP_bac_1 1e-11 27.2 %
:HMM:PFM   132->396 PF01547 * SBP_bac_1 3.7e-23 21.2 240/314  
:HMM:PFM   425->486 PF12010 * DUF3502 1.2e-05 29.0 62/140  
:HMM:PFM   7->30 PF10399 * UCR_Fe-S_N 4.6e-05 41.7 24/41  
:BLT:SWISS 99->541 LIPO_BACSU 2e-19 25.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55644.1 GT:GENE AAZ55644.1 GT:PRODUCT ABC-type sugar transport system periplasmic component GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 1859713..1861386 GB:FROM 1859713 GB:TO 1861386 GB:DIRECTION + GB:PRODUCT ABC-type sugar transport system periplasmic component GB:PROTEIN_ID AAZ55644.1 GB:DB_XREF GI:71915742 InterPro:IPR006311 LENGTH 557 SQ:AASEQ MRHSHPSPGHGPSRRRFLGLTGAAAALVAGSGLLSACAPKGPRPGSSGSAANLDKLDALVPDYIPFQAVEPDIPGTHGAPPGFTSYPTELVQAVDGTPGKGGSYKAMAPLWGPIPPGLGENSFYDFVNSKLGTTIDFQFQDGNTIIDKMNAVIAAGDVVDITMIPDWAINLIPDFNEAAPQLFEDLTPYLAGSAVEPYPMLASLPTNAWKWGVFSDRLYGVPWPTDPLSEWIFYRKDLFDKHGWGLPTTAEELFELGEEINDPRNNRWAFGDFYRVARQIFRAPREWRYEDGKLVHRYETPEFEEAVAFMRRVYDAGLVHPDIAAGTGANSKELFNSGKIVITQDGFGAWTEAYQAILPQNPDFRMDLVPVFAHDGGTPSLHGNDPSSQSVFIKKGLGEEKVTEILAVLNYCAAPFGTVEYMVYRYGEEGRHYELNDDGAPELTELGQKEVSNGYLFISGRNNAIAESEYPDYVESFTAWFNEAAQYTEENPFEGIRIQRPSAYVSAEQPTEDKITDILRGRREVSELSEVVAQWRRDGGDAARDFYGDVLAEHGRA GT:EXON 1|1-557:0| BL:SWS:NREP 1 BL:SWS:REP 99->541|LIPO_BACSU|2e-19|25.1|426/502| SEG 18->38|lgltgaaaalvagsgllsaca| BL:PDB:NREP 1 BL:PDB:REP 218->444|1y3nA|2e-07|28.5|207/490| RP:PDB:NREP 1 RP:PDB:REP 133->383|3d4cA|8e-16|16.6|229/470| RP:PFM:NREP 1 RP:PFM:REP 132->371|PF01547|1e-11|27.2|217/282|SBP_bac_1| HM:PFM:NREP 3 HM:PFM:REP 132->396|PF01547|3.7e-23|21.2|240/314|SBP_bac_1| HM:PFM:REP 425->486|PF12010|1.2e-05|29.0|62/140|DUF3502| HM:PFM:REP 7->30|PF10399|4.6e-05|41.7|24/41|UCR_Fe-S_N| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF01547|IPR006059| GO:PFM GO:0006810|"GO:transport"|PF01547|IPR006059| RP:SCP:NREP 1 RP:SCP:REP 123->553|1j1nA|7e-26|11.4|428/492|c.94.1.1| HM:SCP:REP 36->555|1y3nA1|4.5e-63|20.9|454/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 48 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- ----4---------------------------------------152-1---111--1------2--11-1------------------------------------------------------------------------------------------------------------------------------------------113312-------1---------7-----------------------------------------------------------------------------------------------------------------2----------------------------------------------------------------------------------11-1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 372 STR:RPRED 66.8 SQ:SECSTR #############################################################################################################EccGGGcHHHHHHHHHHHHHcTTHccEEEEEccTTHHHHHHHHHTTTccccEEEEcTTTHHHHHHHHTHHTTccccccccHHHHHHHHHTHHHTccHHHHHHTcccccccEEEEEEEccccEEEEETTTcccccccTTHHHHHHHHHHTTTcEEEccccHHHHHHHHTTccccccEEETTEEETTccccccHHHHHHHHHHHHHHHTTcccTTcTTccHHHHHHHHHTTcEEEEEccTHEcGGGHHHHHHTTccEEEEcccccTTcccccEEEEcEE###EEEccTccTcccHHHHHHHHHHHHcHHHHHHHHHHTTcHHHccEEccTTTGGGccHHHHTcTTTcccHHHHTTEEccccccHHHHHHHHHHHHHH######################################################################### DISOP:02AL 1-15, 37-55, 93-98, 553-557| PSIPRED ccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHEEEEEcccccccccccccccccHHHHHccccccccccccEEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccHHHHHcEEEccEEEEEEEEccccccEEEEEHHHHHHccccccccHHHHHHHHHHHHcccccEEEccHHHHHHHHHHHHcccccccccEEEEccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHccccccEEEEEccccccccccEEcccccEEEEEEEcccccHHHHHHHHHHHHHHcHHHHHHHHHHHccccccEEEEccccccccccccHHHcccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHccc //