[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermobifida fusca YX (tfus0)
Gene : AAZ55675.1
DDBJ      :             D-alanine--D-alanine ligase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  851/915 : Eukaryota  12/199 : Viruses  0/175   --->[See Alignment]
c.30.1d.142.1
:329 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->315 1iovA PDBj 2e-43 36.2 %
:RPS:PDB   19->328 3e5nA PDBj 5e-36 32.9 %
:RPS:SCOP  19->110 1ehiA1  c.30.1.2 * 4e-20 32.6 %
:RPS:SCOP  112->326 1e4eA2  d.142.1.1 * 6e-38 30.8 %
:HMM:SCOP  16->110 1e4eA1 c.30.1.2 * 1.1e-23 45.3 %
:HMM:SCOP  112->322 1iowA2 d.142.1.1 * 4.2e-46 39.8 %
:RPS:PFM   19->101 PF01820 * Dala_Dala_lig_N 1e-07 45.8 %
:RPS:PFM   139->321 PF07478 * Dala_Dala_lig_C 6e-32 44.9 %
:HMM:PFM   119->320 PF07478 * Dala_Dala_lig_C 1.3e-48 33.5 197/203  
:HMM:PFM   19->61 PF01820 * Dala_Dala_lig_N 3.4e-11 41.9 43/117  
:HMM:PFM   69->101 PF01820 * Dala_Dala_lig_N 4.3e-13 63.6 33/117  
:BLT:SWISS 19->328 DDL_PELCD 1e-49 40.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55675.1 GT:GENE AAZ55675.1 GT:PRODUCT D-alanine--D-alanine ligase GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(1906928..1907917) GB:FROM 1906928 GB:TO 1907917 GB:DIRECTION - GB:PRODUCT D-alanine--D-alanine ligase GB:PROTEIN_ID AAZ55675.1 GB:DB_XREF GI:71915773 LENGTH 329 SQ:AASEQ MTTAEQGRREGRTVADLNRVLVLAGGLSPEHEVSVRSGRRVAEALRRLDVEVQTCDVGPELLNLLTDDPPQVVFPVLHGTSGEDGAIREVLELAGVPYVGARPDACRATYAKPIAKTLVAEQGIAVPRGLALPKSLFHDLGAHAVLERIVAMLGLPLFVKPAQGGSAFGATAVTEASALPAALVSCFAYSDTALIEQQVTGVEVAVGVLDLGDGPVALPAVEIVPDGGVYDYAARYTAGRTEFFSPARLSDEVARAAADAAVTAHRALGLRDVSRTDLIIDETGRVYFLEVNVSPGMTDTSTLPLAVEAAGMDFAVVCRELAHRALLRG GT:EXON 1|1-329:0| BL:SWS:NREP 1 BL:SWS:REP 19->328|DDL_PELCD|1e-49|40.2|291/305| SEG 253->267|varaaadaavtahra| BL:PDB:NREP 1 BL:PDB:REP 18->315|1iovA|2e-43|36.2|293/306| RP:PDB:NREP 1 RP:PDB:REP 19->328|3e5nA|5e-36|32.9|289/340| RP:PFM:NREP 2 RP:PFM:REP 19->101|PF01820|1e-07|45.8|83/108|Dala_Dala_lig_N| RP:PFM:REP 139->321|PF07478|6e-32|44.9|178/199|Dala_Dala_lig_C| HM:PFM:NREP 3 HM:PFM:REP 119->320|PF07478|1.3e-48|33.5|197/203|Dala_Dala_lig_C| HM:PFM:REP 19->61|PF01820|3.4e-11|41.9|43/117|Dala_Dala_lig_N| HM:PFM:REP 69->101|PF01820|4.3e-13|63.6|33/117|Dala_Dala_lig_N| GO:PFM:NREP 5 GO:PFM GO:0005618|"GO:cell wall"|PF01820|IPR011127| GO:PFM GO:0008716|"GO:D-alanine-D-alanine ligase activity"|PF01820|IPR011127| GO:PFM GO:0009252|"GO:peptidoglycan biosynthetic process"|PF01820|IPR011127| GO:PFM GO:0008716|"GO:D-alanine-D-alanine ligase activity"|PF07478|IPR011095| GO:PFM GO:0009252|"GO:peptidoglycan biosynthetic process"|PF07478|IPR011095| RP:SCP:NREP 2 RP:SCP:REP 19->110|1ehiA1|4e-20|32.6|92/132|c.30.1.2| RP:SCP:REP 112->326|1e4eA2|6e-38|30.8|201/211|d.142.1.1| HM:SCP:REP 16->110|1e4eA1|1.1e-23|45.3|95/0|c.30.1.2|1/1|PreATP-grasp domain| HM:SCP:REP 112->322|1iowA2|4.2e-46|39.8|206/0|d.142.1.1|1/1|Glutathione synthetase ATP-binding domain-like| OP:NHOMO 1063 OP:NHOMOORG 865 OP:PATTERN ----------------------------------------------1--------------------1 111-311111121111111-1111111111111111111122131211233111111111223222212121111111222121121111111111---1111111--211111111-1-111111111111112111111111111111111111111111111111111111111111111111111111111111122212222221111112221112111111111331111111111111111111121111111111111111111111111111111111111111121111111111111111111111111111421111111111111211122132111111112211111111112111111-211111111114221111111122222222221-111112111211211122222211111111131111111111111111111111111--------11111111111111111111111111111111111111111111211111121111111111111111111111111111121111111111111111211111111111111111111122223322-11-1------11-11111111-1-111111111111212111111111111111111-1111111----22112212222222222-2222222222222122222222111112221222222222212222222221121111111111111111111111111121111111111111111111111111111122221212121331222111-111111111211111111112212222222111111111111111111111111--------------------------1112-13112111 -----------------------------------------------------------111-----------------------------------------------------------------------------------------------------1---------1----1------3112-31------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 329 STR:RPRED 100.0 SQ:SECSTR cccccccccccHHHHcccEEEEEEEcccTTHHHHHHHHHHHHHHccTTTEEEcEEEEcGGGcEEcTTcTTTEEEEEEccHHHHccHHHHHHHHTTcccccccHHHHHHHHcHHHHHHHHHHTTcccccEEEEEHHHHTTccHHHHHHHHGGGccccEEEEEccccccTTcEEEccGGGHHHHHHHHTTTccEEEEEEccccEEEEEEEEEcTTccEEcccEEEEEccccccEEEEEEEEcccEEccccccHHHHHHHHHHHHHHHHHHTcccEEEEEEEEcTTccEEEEEEEccccccTTcHHHHHHHTTTccHHHHHHHHHHHHHHHc DISOP:02AL 6-14| PSIPRED cccccccccccHHHHHccEEEEEEccccccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHccccEEEEcccccccccHHHHHHHHHcccEEEcccHHHHHHHccHHHHHHHHHHccccccccEEEcccHHHccccHHHHHHHHHHccccEEEEEccccccEEEEEEEcHHHHHHHHHHHHHccccEEEEEEccccEEEEEEEEcccccEEEEEEEEEccccEEEEEEEEEcccEEEEEcccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHcc //