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Thermobifida fusca YX (tfus0)
Gene : AAZ55800.1
DDBJ      :             helicase, C-terminal:DEAD/DEAH box helicase, N-terminal
Swiss-Prot:             

Homologs  Archaea  66/68 : Bacteria  141/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.1.8c.37.1
:947 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   47->210,386->488 2zj8A PDBj 7e-23 37.3 %
:RPS:PDB   17->216,391->474 3dinA PDBj 2e-17 15.1 %
:RPS:PDB   569->614 3b8eA PDBj 8e-04 13.0 %
:RPS:PDB   661->737 3ckdB PDBj 7e-04 20.8 %
:RPS:SCOP  4->180 1gm5A3  c.37.1.19 * 1e-20 26.5 %
:RPS:SCOP  391->485 1sfsA  c.1.8.8 * 7e-14 11.8 %
:HMM:SCOP  41->488 2bmfA2 c.37.1.14 * 1.4e-44 28.3 %
:RPS:PFM   37->181 PF00270 * DEAD 2e-12 35.9 %
:RPS:PFM   778->941 PF08148 * DSHCT 2e-22 37.8 %
:HMM:PFM   777->945 PF08148 * DSHCT 2.7e-50 39.5 167/180  
:HMM:PFM   35->183 PF00270 * DEAD 2.5e-24 29.5 149/167  
:HMM:PFM   388->468 PF00271 * Helicase_C 1.4e-07 28.8 73/78  
:BLT:SWISS 31->942 HELY_MYCLE 0.0 51.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55800.1 GT:GENE AAZ55800.1 GT:PRODUCT helicase, C-terminal:DEAD/DEAH box helicase, N-terminal GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2062463..2065306) GB:FROM 2062463 GB:TO 2065306 GB:DIRECTION - GB:PRODUCT helicase, C-terminal:DEAD/DEAH box helicase, N-terminal GB:PROTEIN_ID AAZ55800.1 GB:DB_XREF GI:71915898 InterPro:IPR001650 InterPro:IPR002110 InterPro:IPR011545 LENGTH 947 SQ:AASEQ MSTYAARYAEFRRRQKESSPTIEEFQNLYGFDFDDFQIRACKALETGHGVLVAAPTGSGKTVVGEFAVHLALRDGRKCFYTTPIKALSNQKYTDLVRRYGSDKVGLLTGDNSINGEAPVVVMTTEVLRNMLYAGSATLSGLAYVVMDEVHYLADRFRGAVWEEVIIHLPESVQIAALSATVSNAEEFGQWLQQVRGDTSVIVDEKRPVPLWQHMMVGTRIHDLFVEPEGTDTGQEEEKNGRGSRKRRRSRHARQRTVEIEVGGERLHVNPKLIRFAEEDARLTQLAYQRRHPQARARGGAPRPRSRFAPPTRAQIVEQLDREGLLPAITFIFSRAGCDEAVRQCVASGLVLTTPEEAAEIREYAERQCAEIPPADLNVLGYSEWLQALECGIAAHHAGMLPTFKEVVEVLFSRGLIRAVFATETLALGINMPARTVVIEKLDKWNGETHVALTPGEYTQLTGRAGRRGIDVEGHAVVVWQPGTDPEMVAGLAGTRTYPLNSSFQPSYNMAVNLVAQVGRERGRAMLESSFAQFQADRSVVGLVRKLRAQQEALEGYAKAAYDPRGDFMEYAAMRRRLSDLESAAQRNRRTARRKEAERSLRALRTGDIIRIPSGRHAGYAVVLDPGLDKGPLPVPLVLTVNRQVKRVSANDFPIPVEPTGRLRIPKSFSARSAQARRDLASALRSKLETLPTAPIRHRVRDGAPEDPEIAELRARIREHPCHHSEGREDRARWAERYFRLKKETEELERRIESRSHVIARTFDRVCGVLQELDYLEGDTVTEDGRLLSRIYSELDLLAAESLRRGVWDALGPEELAACVSALVYESRRPDEVFARVPSGPVEEALNAMMRLWGELSDIEHRHRVSFLREPDLGFVWPTYRWARGDQLDHILNEAGMPAGDFVRSTKQLIDLLGQIAQAVPEASGVRTTARQAADKLMRGVVAYTSVG GT:EXON 1|1-947:0| BL:SWS:NREP 1 BL:SWS:REP 31->942|HELY_MYCLE|0.0|51.9|876/920| SEG 241->255|rgsrkrrrsrharqr| SEG 289->313|rrhpqararggaprprsrfapptra| SEG 355->366|eeaaeireyaer| SEG 739->755|rlkketeelerriesrs| BL:PDB:NREP 1 BL:PDB:REP 47->210,386->488|2zj8A|7e-23|37.3|260/700| RP:PDB:NREP 3 RP:PDB:REP 17->216,391->474|3dinA|2e-17|15.1|283/816| RP:PDB:REP 569->614|3b8eA|8e-04|13.0|46/998| RP:PDB:REP 661->737|3ckdB|7e-04|20.8|77/239| RP:PFM:NREP 2 RP:PFM:REP 37->181|PF00270|2e-12|35.9|145/167|DEAD| RP:PFM:REP 778->941|PF08148|2e-22|37.8|164/176|DSHCT| HM:PFM:NREP 3 HM:PFM:REP 777->945|PF08148|2.7e-50|39.5|167/180|DSHCT| HM:PFM:REP 35->183|PF00270|2.5e-24|29.5|149/167|DEAD| HM:PFM:REP 388->468|PF00271|1.4e-07|28.8|73/78|Helicase_C| GO:PFM:NREP 5 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF08148|IPR012961| GO:PFM GO:0016818|"GO:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides"|PF08148|IPR012961| RP:SCP:NREP 2 RP:SCP:REP 4->180|1gm5A3|1e-20|26.5|162/259|c.37.1.19| RP:SCP:REP 391->485|1sfsA|7e-14|11.8|93/213|c.1.8.8| HM:SCP:REP 41->488|2bmfA2|1.4e-44|28.3|290/0|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1674 OP:NHOMOORG 406 OP:PATTERN 11111-21111111121121111143334243322222242212123132322232323321111-11 --1122222222221-211-12111111111132222222122322222221222222--222232222222222222--11-1-------------------------------------------------------------12111111111111111111111111111111111111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-112-2--------------1--------------1------1----------------------------------------------1-----------------------------------------------------------------------11----1----1-----------1--------------------------------111--------------------11111121----------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------------------------------------------------------------1---------2- 44666571F5634474566566666655566556555666556554565454445566566655545425544345515555555556-4A65677545556455445E8C78578A78377669D473H*92BAC65657477557554C549645575EF587E3566G67645567*8A897A56B6976654647 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--- STR:NPRED 632 STR:RPRED 66.7 SQ:SECSTR #cHcHHHHHHHHHHHGHHHHHHHHHHHHHccHcccccTTHHHHHHHHHccEEcccccccHHHHHHHHHHHHHTTcccEEEEEccHHHHHHHHHHTHHHHHTccccEEccccETTTHHHHHHHHHHcccccccccccccHHHHHHHGGGccccEEcHHHHHHccEEEHHHHHHHHccccccTTcccccccccEEEETHHHHTTccccccEEcccccTccccH#############################################################################################################################################################GGHHcHHHHTTcccccEEEccccHHHHHHHHHHccccccEEEEEGGGcccccccccccGGGccccEEEEccccccHHHHHHHHHTcccTTcccEEEcccccccGGGccGGGcHHHHHHHHHHTTcccTTccccccHcGGGGGGccccTTTTcccHHHHHHHHHHHHTTcccHHHHHHHHTTTccTTccGGGTcccGGGccEETTEEcEEEcTTccEEEccccEEEcccccccccccccccEEccHHHHHTcccccccccTTHHHHHccTTccccccccccEEccEEEEccccGGGcTTTTcccccccEEcccccccccccHHHHTTcccccccTTTTHHHHHHHHHHHHHccHHHHHHHHHHHHHH#############HHHHHHHHHHHHHHHHTTcccccTHHHHHHHHHHHHHHHHTTcEEE################################################################################################################################################ DISOP:02AL 289-306, 667-677| PSIPRED cccHHHHHHHHHHHHccHHHHHHHHHHHccccccHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHcccEEEEEEccccccccccEEEEcHHHHHHHHHcccHHHccccEEEEcHHHHHccccccHHHHHHHHHccccccEEEEEcccccHHHHHHHHccccccEEEEccccccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccEEEEccccHHHHHHHHHHHHccccEEEEEcHHHHHHccccccEEEEEccccccccccEEccHHHHHHHHHHccccccccEEEEEEEEccccHHHHHHHHHccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccEEEEEcccccccccccEEEcccccccccEEccccccccccEEEEEccccccccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccEEEcccc //