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Thermobifida fusca YX (tfus0)
Gene : AAZ55822.1
DDBJ      :             transcriptional regulator, GntR family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  136/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5a.78.1
:239 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   41->218 2di3B PDBj 2e-07 29.9 %
:RPS:PDB   17->228 1e2xA PDBj 9e-16 13.0 %
:RPS:SCOP  17->81 3bwgA1  a.4.5.6 * 5e-05 18.5 %
:RPS:SCOP  100->229 2hs5A2  a.78.1.1 * 3e-16 14.8 %
:HMM:SCOP  3->76 1hw1A1 a.4.5.6 * 1.1e-16 39.2 %
:RPS:PFM   100->221 PF07729 * FCD 2e-10 36.1 %
:HMM:PFM   98->220 PF07729 * FCD 1.5e-28 35.8 123/125  
:HMM:PFM   7->69 PF00392 * GntR 1.4e-18 41.3 63/64  
:BLT:SWISS 42->182 DGOR_ECOLI 1e-09 25.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55822.1 GT:GENE AAZ55822.1 GT:PRODUCT transcriptional regulator, GntR family GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 2088329..2089048 GB:FROM 2088329 GB:TO 2089048 GB:DIRECTION + GB:PRODUCT transcriptional regulator, GntR family GB:PROTEIN_ID AAZ55822.1 GB:DB_XREF GI:71915920 InterPro:IPR000524 LENGTH 239 SQ:AASEQ MGSESLADRLADRLLDQVVRGELAVDEALPSEAEIAAAADVSRLTVREAVKVLRTKNIVRVKRGRGTYVNAPEHWTDLELILRMAQRRSGAGAAALGLLEVRRILEAGAAELCAQRRSDADLALLTTHVAEMDKAIAADDASTFARAETAFHETIVRSCGNVFIPAICAPVDRLLLHLHARTATIAHIRVRAQSHHRRILSGIAAGSPAAARDAMRAHFDQLAEDLLRHVVDRCGVSEP GT:EXON 1|1-239:0| BL:SWS:NREP 1 BL:SWS:REP 42->182|DGOR_ECOLI|1e-09|25.9|139/229| SEG 6->16|ladrladrlld| SEG 27->39|ealpseaeiaaaa| SEG 90->99|gagaaalgll| BL:PDB:NREP 1 BL:PDB:REP 41->218|2di3B|2e-07|29.9|167/230| RP:PDB:NREP 1 RP:PDB:REP 17->228|1e2xA|9e-16|13.0|207/222| RP:PFM:NREP 1 RP:PFM:REP 100->221|PF07729|2e-10|36.1|122/125|FCD| HM:PFM:NREP 2 HM:PFM:REP 98->220|PF07729|1.5e-28|35.8|123/125|FCD| HM:PFM:REP 7->69|PF00392|1.4e-18|41.3|63/64|GntR| RP:SCP:NREP 2 RP:SCP:REP 17->81|3bwgA1|5e-05|18.5|65/78|a.4.5.6| RP:SCP:REP 100->229|2hs5A2|3e-16|14.8|128/138|a.78.1.1| HM:SCP:REP 3->76|1hw1A1|1.1e-16|39.2|74/0|a.4.5.6|1/1|"Winged helix" DNA-binding domain| OP:NHOMO 174 OP:NHOMOORG 136 OP:PATTERN -------------------------------------------------------------------- ----2-1-------1---------11-----------1221--2--1-----226-------2---322-1-----------1----------------------2---1-----------------------------------1-------------------------------------1-------------------------31111----1----------1-11---------------1------------------------------1111111---------1-----------1-----------1111-2--1------------11------------1-11------------------122--------1----------11111111112------1---3--1----131221111----11---11-1-------------1--------------------------------------1111------1----1133--------1-21--1-11-----1-3-21---------1111111---1---------1-----------------------1----------------------------------11------1---1111----1----------------------------------------------------------------------------1--------------------------------------------1---------------------1111-1--1-----121------------1------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 217 STR:RPRED 90.8 SQ:SECSTR ################HHHTTcccTTcccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTEEEEEccHHHHccGGGHHHHHHHcTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHGGGTccTTccHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHTcGGGHHHHHHHHHHHHHHHHHHHHHHH###### DISOP:02AL 1-3, 235-239| PSIPRED cccccHHHHHHHHHHHHHHccccccccccccHHHHHHHHccccHHHHHHHHHHHHcccEEEEccccEEEEcccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc //