[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermobifida fusca YX (tfus0)
Gene : AAZ55836.1
DDBJ      :             helix-turn-helix motif
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  14/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:279 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   20->71 1b0nA PDBj 6e-07 25.0 %
:RPS:SCOP  20->71 1b0nA2  a.35.1.3 * 3e-08 25.0 %
:HMM:SCOP  6->72 1y9qA1 a.35.1.8 * 4.5e-08 31.8 %
:HMM:PFM   18->71 PF01381 * HTH_3 1.7e-09 26.9 52/55  
:BLT:SWISS 136->244 UVRB_EUBR3 8e-04 25.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55836.1 GT:GENE AAZ55836.1 GT:PRODUCT helix-turn-helix motif GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2103608..2104447) GB:FROM 2103608 GB:TO 2104447 GB:DIRECTION - GB:PRODUCT helix-turn-helix motif GB:PROTEIN_ID AAZ55836.1 GB:DB_XREF GI:71915934 InterPro:IPR001387 LENGTH 279 SQ:AASEQ MAGRYSPSARRRRLSALLRKMREERGLTIDEVSRRLDWPSGKLSRMERNEWKHPSPRDMQDLAEVYELSPEMREAVINLARESRVRGWWVEYRDVLRGGLADFEAGASMIRTYEALLIPGLLQTPDYAAAVMRSGRVMDGDDITRKVAGRMRRQQVLEGDDPLYLWALIDEAALRKQVGGREVMTAQIQRLIDMAARPNVDIQVVRDSFGAHAAIDGSFMILDFQDPADPPMVYLETATDDLYLEDPKVVQRYVGIFGHTCSAAETPQRSVAYLKNLIA GT:EXON 1|1-279:0| BL:SWS:NREP 1 BL:SWS:REP 136->244|UVRB_EUBR3|8e-04|25.9|108/100| SEG 2->19|agryspsarrrrlsallr| RP:PDB:NREP 1 RP:PDB:REP 20->71|1b0nA|6e-07|25.0|52/103| HM:PFM:NREP 1 HM:PFM:REP 18->71|PF01381|1.7e-09|26.9|52/55|HTH_3| RP:SCP:NREP 1 RP:SCP:REP 20->71|1b0nA2|3e-08|25.0|52/68|a.35.1.3| HM:SCP:REP 6->72|1y9qA1|4.5e-08|31.8|66/0|a.35.1.8|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 209 OP:NHOMOORG 14 OP:PATTERN -------------------------------------------------------------------- ----6-------------------------------D----657----------------JK--N9ONOIC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 78 STR:RPRED 28.0 SQ:SECSTR ###################HHHHHTTccHHHHHHHHTccHHHHHHHHTTccccccHHHHHHHHHHHTccHHHHHHTTTccccHHHHHHHHHHHHHHH###################################################################################################################################################################################### DISOP:02AL 1-6, 8-11| PSIPRED ccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHHHHHHEEEEccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccEEEEEcccHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHc //