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Thermobifida fusca YX (tfus0)
Gene : AAZ55934.1
DDBJ      :             HRDC:3'-5' exonuclease
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  355/915 : Eukaryota  15/199 : Viruses  0/175   --->[See Alignment]
a.60.8c.55.3
:420 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->404 3cymA PDBj 3e-64 39.1 %
:RPS:PDB   22->320 3cymA PDBj 3e-23 37.2 %
:RPS:SCOP  36->212 1yt3A3  c.55.3.5 * 6e-23 31.4 %
:RPS:SCOP  224->319 2hbjA1  a.60.8.4 * 2e-17 20.0 %
:HMM:SCOP  18->238 2hbjA2 c.55.3.5 * 3e-56 36.5 %
:HMM:SCOP  218->331 2cprA1 a.60.8.4 * 3.5e-26 32.7 %
:RPS:PFM   37->187 PF01612 * 3_5_exonuc 4e-13 40.3 %
:RPS:PFM   243->309 PF00570 * HRDC 2e-06 38.8 %
:HMM:PFM   38->199 PF01612 * 3_5_exonuc 1.3e-37 35.6 160/174  
:HMM:PFM   243->309 PF00570 * HRDC 1.3e-20 32.8 67/68  
:HMM:PFM   323->409 PF00756 * Esterase 0.00033 23.0 87/252  
:BLT:SWISS 36->281 RND_ECOLI 5e-15 30.9 %
:PROS 155->173|PS01008|DNAA
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55934.1 GT:GENE AAZ55934.1 GT:PRODUCT HRDC:3'-5' exonuclease GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 2225998..2227260 GB:FROM 2225998 GB:TO 2227260 GB:DIRECTION + GB:PRODUCT HRDC:3'-5' exonuclease GB:PROTEIN_ID AAZ55934.1 GB:DB_XREF GI:71916032 InterPro:IPR002121 InterPro:IPR002562 LENGTH 420 SQ:AASEQ MLNSKTEESPDPESTASEQTPEAPLLSEPRDGIPPVVADDEELARVAAKFAAGSGPVAVDAERASGYRYGQRAYLVQLRRAGAGTALIDPVACPDLSVLRDAVGDAEMVLHAAHQDLPCLTEVHLRPRRLFDTELAGRLLGYQRVGLGAMVERVLGVRLAKEHAAVDWSTRPLPEDWLRYAALDVEVLIELRDALEAELAETGKLEWARQEFAAVLAAPPKEPRPDPWRRTSGIHRVRSQRGLGVVRELWLERDRIARERDLSPGRVLQDSAIVEAALAMPRTPQELTAIKTFTVRLARRYVPVWLKAINRVRDMKPAELPQPSPPGYGPPPTNRWADRDPAAARRLEAARSVVAEIAERVGMPTENLLQPDAVRRLAWSPPSQVSVDSVAEHLRTHQARDWQIELTAAALAEALRAADR GT:EXON 1|1-420:0| BL:SWS:NREP 1 BL:SWS:REP 36->281|RND_ECOLI|5e-15|30.9|243/375| PROS 155->173|PS01008|DNAA|PDOC00771| SEG 188->201|lielrdaleaelae| SEG 321->332|pqpsppgygppp| SEG 335->356|rwadrdpaaarrleaarsvvae| SEG 406->418|ltaaalaealraa| BL:PDB:NREP 1 BL:PDB:REP 22->404|3cymA|3e-64|39.1|376/415| RP:PDB:NREP 1 RP:PDB:REP 22->320|3cymA|3e-23|37.2|298/415| RP:PFM:NREP 2 RP:PFM:REP 37->187|PF01612|4e-13|40.3|149/171|3_5_exonuc| RP:PFM:REP 243->309|PF00570|2e-06|38.8|67/68|HRDC| HM:PFM:NREP 3 HM:PFM:REP 38->199|PF01612|1.3e-37|35.6|160/174|3_5_exonuc| HM:PFM:REP 243->309|PF00570|1.3e-20|32.8|67/68|HRDC| HM:PFM:REP 323->409|PF00756|0.00033|23.0|87/252|Esterase| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01612|IPR002562| GO:PFM GO:0005622|"GO:intracellular"|PF01612|IPR002562| GO:PFM GO:0006139|"GO:nucleobase, nucleoside, nucleotide and nucleic acid metabolic process"|PF01612|IPR002562| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF01612|IPR002562| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00570|IPR002121| GO:PFM GO:0005622|"GO:intracellular"|PF00570|IPR002121| RP:SCP:NREP 2 RP:SCP:REP 36->212|1yt3A3|6e-23|31.4|175/193|c.55.3.5| RP:SCP:REP 224->319|2hbjA1|2e-17|20.0|95/96|a.60.8.4| HM:SCP:REP 18->238|2hbjA2|3e-56|36.5|219/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 218->331|2cprA1|3.5e-26|32.7|113/0|a.60.8.4|1/1|HRDC-like| OP:NHOMO 370 OP:NHOMOORG 370 OP:PATTERN -------------------------------------------------------------------- ---1111111111-11111-11111111111111111111111111111111111111111111111111111111111111-1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1111111111111111111111111111111111-11111111111-1111111111111111111111111111111111111111111111---------1-------1---------11111------------------------------------------------------------------------1111----------11111111111111-11---------------------------1111-1--1-11111111111111111111--1---1------11-111-1111111111-11111111111111111111111111-111111111111111111111111--111111111111---1---------11111111111111-1---------------111111111-11111111---------111111111111111----------------------11----------------------------------------------111 ------1-------------------------------------------------------1---111----1------1---------------------------------------------------------------------------1----1-1-1-11-1-------------------------1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 377 STR:RPRED 89.8 SQ:SECSTR #####################ccEEccccTTccccEEccHHHHHHHHHHHHccEEEEEEEEEEcTTTcccccEEEEEEEEEETTEEEEEcHHHHHHTTHHHHHTTcEEEEccHHHHHHHHHHHTccccEEEEHHHHHHHTTcccccHHHHHHHHHcEEcccccTTccTTcccccHHHHHHHHHHHHTHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHcccccccccGGGccTGGTTcHHHHHHHHHHHHHHHHHHHHTTccHHHHccHHHHHHHHHHccccHHHHHTccGGGcccccccccTHHHHHHTTHHHHTTcc####ccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHTccHHHHccHHHHHHHHcc##ccGGGccHHHHHHHHTccHHHH################ DISOP:02AL 1-4, 7-27, 322-338, 418-420| PSIPRED ccccccccccccHHcccccccccccccccccccccEEEcHHHHHHHHHHHHHccccEEEEcccccccccccEEEEEEEEEccccEEEEEEccccHHHHHHHHHccccEEEEcccHHHHHHHHcccEEEccHHHHHHHHHHccccccHHHHHHHHHccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEEcHHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHHccHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHccc //