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Thermobifida fusca YX (tfus0)
Gene : AAZ55960.1
DDBJ      :             23S rRNA methyltransferase/RumA
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  736/915 : Eukaryota  105/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.66.1
:419 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->411 2bh2B PDBj 3e-35 30.0 %
:RPS:PDB   8->416 2bh2A PDBj 9e-43 26.0 %
:RPS:SCOP  8->65 1uwvA1  b.40.4.12 * 5e-19 31.0 %
:RPS:SCOP  66->416 1uwvA2  c.66.1.40 * 9e-32 28.3 %
:HMM:SCOP  6->65 1uwvA1 b.40.4.12 * 5.6e-16 51.7 %
:HMM:SCOP  66->418 1uwvA2 c.66.1.40 * 3.5e-61 29.6 %
:RPS:PFM   240->416 PF05958 * tRNA_U5-meth_tr 2e-23 38.8 %
:HMM:PFM   247->417 PF05958 * tRNA_U5-meth_tr 7e-16 33.1 163/352  
:HMM:PFM   8->58 PF01938 * TRAM 8.4e-14 37.3 51/61  
:BLT:SWISS 9->419 Y2389_STRAW e-112 50.4 %
:PROS 349->380|PS01230|TRMA_1
:PROS 401->411|PS01231|TRMA_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55960.1 GT:GENE AAZ55960.1 GT:PRODUCT 23S rRNA methyltransferase/RumA GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2255884..2257143) GB:FROM 2255884 GB:TO 2257143 GB:DIRECTION - GB:PRODUCT 23S rRNA methyltransferase/RumA GB:PROTEIN_ID AAZ55960.1 GB:DB_XREF GI:71916058 InterPro:IPR000051 InterPro:IPR001566 InterPro:IPR002792 LENGTH 419 SQ:AASEQ MSRLTTHVDVRLDGVAHGGWCVGRHEGQVVFVRHALPGERVRARITEETRRFLRAEAVEVLEASPDRVAPPCPFAGPGRCGGCDWQHASLDAQRRLKAQVVAEQLRRIAGIDREVAVEELPGTPDGLGWRTRVRFAVTPDGTVGLRRHRSHSIEPVDYCPLAHPGIDRLNVPRKTWRNAAEIEVAAAAGTGDTLVTVTPARTGTPELPALDSPVTVLRRSRNGRVQPPRGRHGVTENAAGRRWWVSAGAFWQIHPAAAETLTGAVLDALDPQPGQTALDLYCGVGLFAGALGAAVGPQGRVFGVESGAEAVRDARHNLRDLPQVQITRADVATHLRRWTPPRIDLVVADPPRSGMGADVVRRLAALRPQRIAYVSCDPATFARDLAVFAEHGYRMDGLRAFDAFPMTHHVECVGVLLPA GT:EXON 1|1-419:0| BL:SWS:NREP 1 BL:SWS:REP 9->419|Y2389_STRAW|e-112|50.4|411/433| PROS 349->380|PS01230|TRMA_1|PDOC00945| PROS 401->411|PS01231|TRMA_2|PDOC00945| SEG 179->188|aaeievaaaa| SEG 283->296|gvglfagalgaavg| BL:PDB:NREP 1 BL:PDB:REP 8->411|2bh2B|3e-35|30.0|383/416| RP:PDB:NREP 1 RP:PDB:REP 8->416|2bh2A|9e-43|26.0|392/418| RP:PFM:NREP 1 RP:PFM:REP 240->416|PF05958|2e-23|38.8|170/259|tRNA_U5-meth_tr| HM:PFM:NREP 2 HM:PFM:REP 247->417|PF05958|7e-16|33.1|163/352|tRNA_U5-meth_tr| HM:PFM:REP 8->58|PF01938|8.4e-14|37.3|51/61|TRAM| GO:PFM:NREP 2 GO:PFM GO:0006396|"GO:RNA processing"|PF05958|IPR010280| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF05958|IPR010280| RP:SCP:NREP 2 RP:SCP:REP 8->65|1uwvA1|5e-19|31.0|58/60|b.40.4.12| RP:SCP:REP 66->416|1uwvA2|9e-32|28.3|336/357|c.66.1.40| HM:SCP:REP 6->65|1uwvA1|5.6e-16|51.7|60/60|b.40.4.12|1/1|Nucleic acid-binding proteins| HM:SCP:REP 66->418|1uwvA2|3.5e-61|29.6|338/358|c.66.1.40|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 1205 OP:NHOMOORG 847 OP:PATTERN ------------------------------------------------------222211-------- 111-111111111111111-11--111111111111111111112111211-111111--1111111111111111112222-111111111-1111--111111111-1-1111111--111121111111111122222111111111111111111111111111111-11----1----11-1111-1222222212222222222222222222332122222222212111111111111111111122222222232222222222331222222222222222222122222222222222222222222222221222222222222221222122232122133111111111111222111211-111-11--1-111111111111111-1-1111--111111111---1111111111111--1----1-1---1---------11111-1--------------------------------1-11111111111111111111111111111111111111111111111111111111111-------1-111121121111111111122222222211111111-------------------------1122211111-1-2222211222222221211--11111------32221313333333333-233333333323333333332322221332333322333333313233332--222222222222---1-----111111111111212111-11111111-111111111111211121111211111111111111111222222111211111111111111-111221111--------1-3------11--1-----1--------112111-111111 -1-------------1-1-11111111111111111-1-1111111-1-1----11111---112111-2112121111112222211-121-1111--1--1--------1---------1-------342--1-----1--11----11----1-1------1-----2--1-1-117111112111-1111--112 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 412 STR:RPRED 98.3 SQ:SECSTR #######EEEEEcEEcTTcEEEEEETTEEEEEETccTTEEEEEEEccccccEEEEEEEEEccccTTccccccTTcTTTTccccccTTccHHHHHHHHHHHHHHHHTccccEccEETccccEEcccccccccEEEEEEEEETTEEEEcTTcccEEEccccTTccHHHHHHHHHHHHHHHHHTcGGGGGEEEEEEEEETTEEEEEEEEcccccHHHEEEEEEccccccEEccccccEEEETTEEEEccTTccccccHHHHHHHHHHHHHHHTccTTcEEEEEccTTTTTHHHHHTHHTTccEEEEEEccHHHHHHHHHHHHHTTEcccEEEEEccTTccGGGcGGGGccccEEEEcccTTTHHHHHHTcccEEEEEEccHHHHHHHHHHHHHTTEEEEEEEEEcccTTccccEEEEEEEEE DISOP:02AL 1-3| PSIPRED ccccccEEEEEEEEEcccccEEEEEccEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEcccHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEEccccEEEEEccccccEEcccccccccHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEEcccccHHHHHHHHHHHHHHcccccEEEEEccccEEEEEEccEEEEEcccccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHccccEEEEEcccHHHHHHHccccccEEEEcccHHHccHHHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccEEEEEEEEEcccccccEEEEEEEEEc //