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Thermobifida fusca YX (tfus0)
Gene : AAZ55986.1
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  11/68 : Bacteria  450/915 : Eukaryota  19/199 : Viruses  0/175   --->[See Alignment]
c.55.3c.60.1
:382 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->31 2z1jA PDBj 5e-04 55.6 %
:BLT:PDB   49->138 2ehgA PDBj 1e-10 36.4 %
:BLT:PDB   182->311 1h2eA PDBj 2e-15 34.6 %
:RPS:PDB   9->134 3d0pC PDBj 2e-15 12.4 %
:RPS:PDB   182->380 1ebbA PDBj 1e-31 26.1 %
:RPS:SCOP  9->134 1zbfA1  c.55.3.1 * 5e-16 12.4 %
:RPS:SCOP  182->380 1ebbA  c.60.1.1 * 6e-32 26.1 %
:HMM:SCOP  5->135 1zbfA1 c.55.3.1 * 4.6e-33 35.2 %
:HMM:SCOP  181->381 1ebbA_ c.60.1.1 * 1.5e-60 44.5 %
:RPS:PFM   11->135 PF00075 * RnaseH 2e-04 32.5 %
:RPS:PFM   184->317 PF00300 * PGAM 5e-17 38.8 %
:HMM:PFM   183->334 PF00300 * PGAM 3.5e-42 36.2 152/158  
:HMM:PFM   13->137 PF00075 * RnaseH 6.4e-18 29.8 114/131  
:BLT:SWISS 8->380 Y2253_MYCBO 1e-60 44.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ55986.1 GT:GENE AAZ55986.1 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2284461..2285609) GB:FROM 2284461 GB:TO 2285609 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:PROTEIN_ID AAZ55986.1 GB:DB_XREF GI:71916084 LENGTH 382 SQ:AASEQ MRAGMGRRIVIEADGASRGNPGPAGYGARVRDADTGELLAEVASPIGEATNNVAEYRGLIAGLEAAAAIDPTAAVEVRMDSKLVVEQMSGRWKIKHPALQPLARQARQVAASLASVTYRWVPREQNAQADRLANEALDGAVRNWSTQRTEPVQAAEPVEPPVDQGKTDGTALGWGPADTNPTRLLLLRHGQTPMSVERRFAGIGDIPLTEVGHEQAKAAARRLAQRPVDVVVSSPLRRTLDTAQYVAKECGLDVEVEEDFREADFGAWEGMTFAEARKHSPQEFHRWLSDPHVPPPGGESFAEVSRRVTRARDRVLARHRGRTVVVVTHVTPIKLLVQQAMLAPLPALYRMHLDVACLCEVHCFSDGPMVVRSLNDTGHLAC GT:EXON 1|1-382:0| BL:SWS:NREP 1 BL:SWS:REP 8->380|Y2253_MYCBO|1e-60|44.8|362/364| SEG 58->69|gliagleaaaai| SEG 150->162|epvqaaepveppv| SEG 215->226|qakaaarrlaqr| SEG 318->331|rhrgrtvvvvthvt| BL:PDB:NREP 3 BL:PDB:REP 5->31|2z1jA|5e-04|55.6|27/151| BL:PDB:REP 49->138|2ehgA|1e-10|36.4|88/149| BL:PDB:REP 182->311|1h2eA|2e-15|34.6|130/207| RP:PDB:NREP 2 RP:PDB:REP 9->134|3d0pC|2e-15|12.4|121/133| RP:PDB:REP 182->380|1ebbA|1e-31|26.1|199/202| RP:PFM:NREP 2 RP:PFM:REP 11->135|PF00075|2e-04|32.5|114/132|RnaseH| RP:PFM:REP 184->317|PF00300|5e-17|38.8|134/158|PGAM| HM:PFM:NREP 2 HM:PFM:REP 183->334|PF00300|3.5e-42|36.2|152/158|PGAM| HM:PFM:REP 13->137|PF00075|6.4e-18|29.8|114/131|RnaseH| GO:PFM:NREP 2 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00075|IPR002156| GO:PFM GO:0004523|"GO:ribonuclease H activity"|PF00075|IPR002156| RP:SCP:NREP 2 RP:SCP:REP 9->134|1zbfA1|5e-16|12.4|121/132|c.55.3.1| RP:SCP:REP 182->380|1ebbA|6e-32|26.1|199/202|c.60.1.1| HM:SCP:REP 5->135|1zbfA1|4.6e-33|35.2|125/0|c.55.3.1|1/1|Ribonuclease H-like| HM:SCP:REP 181->381|1ebbA_|1.5e-60|44.5|200/202|c.60.1.1|1/1|Phosphoglycerate mutase-like| OP:NHOMO 785 OP:NHOMOORG 480 OP:PATTERN ---1--1------------1-------1-1-2-----------1--111------------------1 11--222333322233334-322233333333233332221222211-111-131-12--112-23343531111---1----21332------1-----------11-1------------------------1-5665522331155233412221-1212132423311-11111--11-2211111121222333333-223321--1112422222-11-1111111-----------------------1-11-----221111-1-----------------------------------------1---------33423-------1-111222---115--12-1122213--111111121--21----------111-111--1--11111111111-1111121-12211--1111---1211----1-------1--------2-----1------------------------------------1111-2----111111--1-111111-111111-1111211111111221122---1-----------112-12-1121-1111-1111111232222232-2-------------------------111---1-1----------------------1---111-------21---1-2222222222-2232212222222222221211----12222222222222222-1112222--211111111111-------------1-------111-------------------111111-221-1-11--1-------------------------11212112221111---111111--------------------------------------31--111111-- ------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------11-11-11-1114-41112221- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 349 STR:RPRED 91.4 SQ:SECSTR ####cTTcccEEEEEEEccccEEEEEEEEETTHHHTccEEEEEEEEEEEcHHHHHHTHHHHHHHHHHHHHTTccccEEEccHHHHHHHHHTcccccccccTTTHHHHHHHHHHHcccccEEEccHHHHcccTTccccHcc############################HHHHTccTTccccEEEEEEEccccHHHHTTcccTTccccccHHHHHHHHHHHHHTTcccccEEEEcccHHHHHHHHHHHTTccccEEEcGGGcccccGGGTTccHHHHHTTcHHHHHHHHHcGGccccccccHHHHHHHHHHHHHHHHHTcTTcEEEEEEcHHHHHHHHHHHHTccGGGTTccccccTTcEEEEEEETTEEEEEEEEEcTTTc# DISOP:02AL 1-5, 141-175| PSIPRED cccccccEEEEEEcccccccccccEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHccccEEEEEEEcHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccEEEEEEcccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccccccEEccccccccHHHHHHHHHHHHHHHcccccEEEEccHHHHHHHHHHHHHHccccEEEcHHHHHccccccccccHHHHHHHcHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHcccHHHHHcccccccEEEEEEEcccccEEEEEEEccccccc //