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Thermobifida fusca YX (tfus0)
Gene : AAZ56054.1
DDBJ      :             Excinuclease ABC subunit C
Swiss-Prot:UVRC_THEFY   RecName: Full=UvrABC system protein C;         Short=Protein uvrC;AltName: Full=Excinuclease ABC subunit C;

Homologs  Archaea  27/68 : Bacteria  883/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.2.9a.60.2d.15.2d.198.1d.226.1
:656 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->101 1yd6D PDBj 6e-18 44.6 %
:BLT:PDB   405->628 2nrvA PDBj 3e-38 48.7 %
:RPS:PDB   32->179 1bqqT PDBj 9e-11 13.1 %
:RPS:PDB   233->636 2bggA PDBj 3e-54 6.9 %
:RPS:SCOP  18->100 1ln0A  d.226.1.1 * 6e-21 19.3 %
:RPS:SCOP  233->305 1oeyJ  d.15.2.2 * 5e-13 11.6 %
:RPS:SCOP  433->567 1xkpB1  d.198.1.1 * 4e-23 10.6 %
:RPS:SCOP  557->643 2oceA1  a.60.2.6 * 5e-16 17.6 %
:HMM:SCOP  16->101 1mk0A_ d.226.1.1 * 2.1e-23 38.4 %
:HMM:SCOP  193->248 1e52A_ a.2.9.1 * 1.3e-12 41.1 %
:HMM:SCOP  522->639 1dgsA1 a.60.2.2 * 4.5e-27 37.3 %
:RPS:PFM   18->94 PF01541 * GIY-YIG 2e-07 38.7 %
:RPS:PFM   405->572 PF08459 * UvrC_HhH_N 7e-47 66.2 %
:HMM:PFM   395->572 PF08459 * UvrC_HhH_N 8.6e-59 56.3 151/155  
:HMM:PFM   210->241 PF02151 * UVR 1.1e-13 46.9 32/36  
:HMM:PFM   18->94 PF01541 * GIY-YIG 1.4e-11 27.3 77/80  
:HMM:PFM   609->636 PF00633 * HHH 4.3e-07 32.1 28/30  
:BLT:SWISS 1->656 UVRC_THEFY 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56054.1 GT:GENE AAZ56054.1 GT:PRODUCT Excinuclease ABC subunit C GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2361510..2363480) GB:FROM 2361510 GB:TO 2363480 GB:DIRECTION - GB:PRODUCT Excinuclease ABC subunit C GB:PROTEIN_ID AAZ56054.1 GB:DB_XREF GI:71916152 InterPro:IPR000305 InterPro:IPR000445 InterPro:IPR001162 InterPro:IPR001943 InterPro:IPR003583 InterPro:IPR004791 LENGTH 656 SQ:AASEQ MTVRPTLRPKPGSIPTDPGVYRFRDEHGRVIYVGKAKNLRARLSSYFQDFSALHPRTQTMISTAADVDWTVVNTEVEALQLEYSWIKEYSPRFNVRYRDDKSYPYLAVTLNEEFPRVQVMRGARRRGVRYFGPYSYAWAIRDTVDLLLRVFPVRTCSAGVFKRARSSGRPCLLGYIDKCSAPCVGRIGVEEYRALAEDFCAFMAGETGRFLRQLEAEMKQAAAAQEYERAARIRDDIQALRTVMEKQAVVLGDSTDCDVIAIAEDQLEAAVQVFYVRGGRIRGERGWVVDKVEDVSTGKLVEQFLAQTYGGADDEESTTAIPREVLVSAEPADRDAVVAWLSKRRGAAVDVRVPQRGDKRALMETVLKNAEQTLARHKSQRASDLTTRSKALAEIAEALGLAEAPLRIECFDISTLQGEHTVASMVVFEDGLARKSEYRRFSIRGAEGADSDVAAMYEVISRRFTRYLEESQRVGELDTLGESGAPQGAERKAPRFAYPPNLVVVDGGRPQVAAAQRALDDLGIEDVAVCGLAKRLEEVWLPGEEDPIILPRTSEGLYLLQRVRDEAHRFAISYHRRKRAKALTASVLDDIPGLGPVRRAALLKHFGSVRRLAQATAAEIAEVPGIGERTAQTIYERLTSVEGGQRTQPENSKADE GT:EXON 1|1-656:0| SW:ID UVRC_THEFY SW:DE RecName: Full=UvrABC system protein C; Short=Protein uvrC;AltName: Full=Excinuclease ABC subunit C; SW:GN Name=uvrC; OrderedLocusNames=Tfu_2021; SW:KW Complete proteome; Cytoplasm; DNA damage; DNA excision; DNA repair;Excision nuclease; SOS response. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->656|UVRC_THEFY|0.0|100.0|656/656| GO:SWS:NREP 6 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA excision| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0004518|"GO:nuclease activity"|Excision nuclease| GO:SWS GO:0009432|"GO:SOS response"|SOS response| SEG 213->232|qleaemkqaaaaqeyeraar| SEG 391->404|alaeiaealglaea| BL:PDB:NREP 2 BL:PDB:REP 7->101|1yd6D|6e-18|44.6|92/96| BL:PDB:REP 405->628|2nrvA|3e-38|48.7|189/218| RP:PDB:NREP 2 RP:PDB:REP 32->179|1bqqT|9e-11|13.1|130/184| RP:PDB:REP 233->636|2bggA|3e-54|6.9|350/395| RP:PFM:NREP 2 RP:PFM:REP 18->94|PF01541|2e-07|38.7|75/80|GIY-YIG| RP:PFM:REP 405->572|PF08459|7e-47|66.2|142/156|UvrC_HhH_N| HM:PFM:NREP 4 HM:PFM:REP 395->572|PF08459|8.6e-59|56.3|151/155|UvrC_HhH_N| HM:PFM:REP 210->241|PF02151|1.1e-13|46.9|32/36|UVR| HM:PFM:REP 18->94|PF01541|1.4e-11|27.3|77/80|GIY-YIG| HM:PFM:REP 609->636|PF00633|4.3e-07|32.1|28/30|HHH| GO:PFM:NREP 6 GO:PFM GO:0004518|"GO:nuclease activity"|PF01541|IPR000305| GO:PFM GO:0005622|"GO:intracellular"|PF01541|IPR000305| GO:PFM GO:0006281|"GO:DNA repair"|PF01541|IPR000305| GO:PFM GO:0003677|"GO:DNA binding"|PF08459|IPR001162| GO:PFM GO:0004518|"GO:nuclease activity"|PF08459|IPR001162| GO:PFM GO:0006289|"GO:nucleotide-excision repair"|PF08459|IPR001162| RP:SCP:NREP 4 RP:SCP:REP 18->100|1ln0A|6e-21|19.3|83/92|d.226.1.1| RP:SCP:REP 233->305|1oeyJ|5e-13|11.6|69/105|d.15.2.2| RP:SCP:REP 433->567|1xkpB1|4e-23|10.6|104/121|d.198.1.1| RP:SCP:REP 557->643|2oceA1|5e-16|17.6|85/90|a.60.2.6| HM:SCP:REP 16->101|1mk0A_|2.1e-23|38.4|86/97|d.226.1.1|1/1|GIY-YIG endonuclease| HM:SCP:REP 193->248|1e52A_|1.3e-12|41.1|56/56|a.2.9.1|1/1|C-terminal UvrC-binding domain of UvrB| HM:SCP:REP 522->639|1dgsA1|4.5e-27|37.3|118/181|a.60.2.2|1/1|RuvA domain 2-like| OP:NHOMO 1032 OP:NHOMOORG 917 OP:PATTERN ------------------------11111111111---1111111111-1111-------------11 1121111111111122222-22112222222111112222222223121111111111112222212111211111111111211111111111112--1111222112111111111111111111111111121111111111211111111111111111111211111111111111111111111111111111111111111111111111111111112222221111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111111222222222212111221111211111111122111111111111111212111111111111111111111111111111111-111111111111111111111111111111111111-111111111111111111111---------1122111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111121111111111111111111111111112111111111111111111111111111111111111111111111111111111111111--11111------11111112222222222-2222222222222222221111111111111211212111111122222221-111111111111--11111111111111111111111111-111111111111111111111111111111111111111111111111111111211111111111111111-111111111111111111111--1-11111111111111111111111111111111 ------------------------------------------------------------------------------------------------------------2-------------------------------------------------------------3--1-1---------1--1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 571 STR:RPRED 87.0 SQ:SECSTR cEEcccccEEEcccccccccEEEEcTTccEEEEEEEEccccccEEccccccccTcccccEEEEcccccHEEEEccccccccEEEcccTTTTccccccccccEE####EEEEEEcccccEEccTT####ccEEEGGGccHHHHT###TTTTHHHHGGGcccc###cccccccccccTTcc#####################################################EcccHHHHHHHHHHHcccccccccccEEEEEHHHHHHHHHHHHHTTccTTcEEEEEEcccccHHH###HHHHHHHHHH######HcccEEEEEEccccHHHHHHHHHHHH##TTccEEEEEGGGccTTTHHHHHHHHHHHHHHHTTccccEEcccTTccT#HHHHcccHHHHccEEEEEEEEEccccEEEEEEEEEcTTccEEEEEEcccEEGGGHHHHHHHHHHHHHHHHHHHTcTTTccEHHEEEEEHHHEEEEEHHccHHTccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHTTcEEEEEEEEEcccEEEccccEEEccccEEEEEEEccccEEEEEEEEEEEEEcccTTTHHHHHHHHHHHHHHHTTcHcTTccccccccHHHHHHHHHHHHHHHHHcGGGHHHHccHH###### DISOP:02AL 1-6, 50-54, 380-389, 578-587, 640-656| PSIPRED ccccHHHHHHHHHccccccEEEEEcccccEEEEEEcHHHHHHHHHHHcccccccHHHHHHHHHHHHcEEEEEccHHHHHHHHHHHHHHHccccccEEEcccccEEEEEEcccccccEEEEEcccccccEEEcccccHHHHHHHHHHHHHHHccEEccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccEEEEEEEccEEEEEEEEEEccEEEccccccccccccccHHHHHHHHHHHHHccccccccccccccEEEEccccccHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccEEEEEEEcccccccccccEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHcHHccccccccccccccccccEEEEEccHHHHHHHHHHHHHccccccEEEEEEcccEEEEEcccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHccHHHHHHcccccHHHHHHHHHHHcccHHHHHHccccccccc //