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Thermobifida fusca YX (tfus0)
Gene : AAZ56178.1
DDBJ      :             ribonuclease H
Swiss-Prot:RNH2_THEFY   RecName: Full=Ribonuclease HII;         Short=RNase HII;         EC=3.1.26.4;

Homologs  Archaea  0/68 : Bacteria  788/915 : Eukaryota  12/199 : Viruses  1/175   --->[See Alignment]
c.55.3
:231 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->209 1io2A PDBj 9e-09 30.7 %
:RPS:PDB   27->209 2dffA PDBj 3e-40 23.0 %
:RPS:SCOP  18->204 2etjA1  c.55.3.1 * 2e-40 31.4 %
:HMM:SCOP  14->211 2etjA1 c.55.3.1 * 3.9e-60 47.2 %
:RPS:PFM   28->204 PF01351 * RNase_HII 7e-28 43.5 %
:HMM:PFM   28->204 PF01351 * RNase_HII 2.4e-44 37.5 176/198  
:BLT:SWISS 1->231 RNH2_THEFY e-119 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56178.1 GT:GENE AAZ56178.1 GT:PRODUCT ribonuclease H GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2513701..2514396) GB:FROM 2513701 GB:TO 2514396 GB:DIRECTION - GB:PRODUCT ribonuclease H GB:PROTEIN_ID AAZ56178.1 GB:DB_XREF GI:71916276 LENGTH 231 SQ:AASEQ MVKASATIPPPTYDVEQELIAAGARVVAGLDEVGRGAWAGPVLVCAAITDGSPPPEGLTDSKRLTPRRRTAMAEQVRSWVRGYAFGQASPAEIDRLGMTEALRLAAHRALDALPVRPDAVIVDGKHDYVGAPWTVRTHVKADLTCVSVAAASVLAKVHRDALMAELDAEYPGYGFATGAGYPSPVHRAALAEHGPTPHHRLSWSYLDRLPRWRHLRVVRDSAVDGQLSLLD GT:EXON 1|1-231:0| SW:ID RNH2_THEFY SW:DE RecName: Full=Ribonuclease HII; Short=RNase HII; EC=3.1.26.4; SW:GN Name=rnhB; OrderedLocusNames=Tfu_2145; SW:KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Manganese;Metal-binding; Nuclease. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->231|RNH2_THEFY|e-119|100.0|231/231| GO:SWS:NREP 5 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0004519|"GO:endonuclease activity"|Endonuclease| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| SEG 101->113|alrlaahraldal| SEG 146->157|vsvaaasvlakv| BL:PDB:NREP 1 BL:PDB:REP 27->209|1io2A|9e-09|30.7|179/213| RP:PDB:NREP 1 RP:PDB:REP 27->209|2dffA|3e-40|23.0|183/210| RP:PFM:NREP 1 RP:PFM:REP 28->204|PF01351|7e-28|43.5|168/190|RNase_HII| HM:PFM:NREP 1 HM:PFM:REP 28->204|PF01351|2.4e-44|37.5|176/198|RNase_HII| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF01351|IPR001352| GO:PFM GO:0004523|"GO:ribonuclease H activity"|PF01351|IPR001352| RP:SCP:NREP 1 RP:SCP:REP 18->204|2etjA1|2e-40|31.4|172/211|c.55.3.1| HM:SCP:REP 14->211|2etjA1|3.9e-60|47.2|193/0|c.55.3.1|1/1|Ribonuclease H-like| OP:NHOMO 812 OP:NHOMOORG 801 OP:PATTERN -------------------------------------------------------------------- 111-111111111111111-11111111111111111-11111111111111111111--1111111111111111111111----111111-1112--11-111111111111111111111111111111111111111111111111111-111111111111111111111-1-1-1111111-111111111111111111111111111111111111--1111-1111111111111111111111111111111111111111111-1111---1111111111111111111111111111111111111111-11111-------1-111111111--1112-111111111111111111--11-111111111111111111111111111111111-11-12--111111111111111--11111111111111111111111---11-1111111111111111--11-1111111111111111111111111111111111111111111111111111111211111111111111-1111111111111111111-111-1-111-111111111111111-12-1111-----1---11-11--1-1-111111111-1111111111111111111111--111-1------11111111111111111-1111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111---1111111112111111111111111111111111111111111--11-111111111--11------1--1-111-------1-1-1-1------1-------1111111111--1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------5-----1-1-1111-------1--1111- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-- STR:NPRED 197 STR:RPRED 85.3 SQ:SECSTR ############HHHHHccEEEEEEEEEEEEEEccccccccEEEEEEEEETTTHHHTGGGGccccHHHHHHHHHHHHTTccEEEEEEEcHHHHTTccHHHHHHHHHHHHHTTccccccEEEEEEHHTTcccccEEEEEETcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccTTccTTcHHHHHHHHHHHHccccTTccTTcTHHHHH###################### DISOP:02AL 1-5, 212-222| PSIPRED cccccccccccccHHHHHHHHccccEEEEEEccccccccccEEEEEEEEccccccccccccccccHHHHHHHHHHHHHHHcEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHcccccHHHHHccc //