[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermobifida fusca YX (tfus0)
Gene : AAZ56201.1
DDBJ      :             pectate lyase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  48/915 : Eukaryota  34/199 : Viruses  0/175   --->[See Alignment]
b.18.1b.80.1
:512 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   63->357 2qx3A PDBj 2e-36 34.5 %
:RPS:PDB   73->359 2bspA PDBj 7e-17 22.9 %
:RPS:SCOP  64->357 1jrgA  b.80.1.1 * 2e-44 24.9 %
:RPS:SCOP  395->510 1gqpA  b.18.1.9 * 4e-07 13.8 %
:HMM:SCOP  34->358 1o88A_ b.80.1.1 * 3.9e-77 36.9 %
:HMM:SCOP  389->510 1tvgA_ b.18.1.9 * 2.8e-10 28.7 %
:RPS:PFM   105->281 PF00544 * Pec_lyase_C 9e-20 42.6 %
:HMM:PFM   76->281 PF00544 * Pec_lyase_C 1.5e-40 32.8 189/201  
:HMM:PFM   404->503 PF00754 * F5_F8_type_C 1.6e-07 19.0 100/129  
:BLT:SWISS 106->357 PELB_ERWCH 5e-34 35.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56201.1 GT:GENE AAZ56201.1 GT:PRODUCT pectate lyase GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2542322..2543860) GB:FROM 2542322 GB:TO 2543860 GB:DIRECTION - GB:PRODUCT pectate lyase GB:PROTEIN_ID AAZ56201.1 GB:DB_XREF GI:71916299 InterPro:IPR002022 InterPro:IPR006311 LENGTH 512 SQ:AASEQ MGRSITRRLASTLATAAVVTAGLTLPVSPASAQTGSATGYAALNGGTTGGAGGQVVRATTGTEIHQALCQRPSTSTPIIIQVEGTINHGNTSKVSGPGCDTASDKIELKKISNVTIVGVGNGALFDQIGIHIRESRNIIIQNVHIRNVKKSGSPTSNGGDAIGMEKDVRNVWVDHVTLEASGGESEGYDGLFDLKDNTQYVTLSYSILRNSGRGGLIGSSESDLSNGYITFHHNLYENIDSRTPLLRGGVAHMYNNHYVRLNNSGINSRAGARAKVENNYFQNSKDVLGTFYTNERGYWEVRGNIFDNVTWSSQGNENYPAGPNPQSTTSVSIPYSYRLDDAGCVPQIVSQTAGANKGNRVSDGNCRAEDPGNPDPGNPDPGNPDPGTPPGGTNLSIGADADGSSKASGTSYKNVIDGDMSTYWSPSGSTGRISVKWGSNVTVSAIHIREAAGAVGNIGSWRVVNNDTGAVLATGTGAGVITFTPTTLRKINFEILSSNGTPRVAEFETYAG GT:EXON 1|1-512:0| BL:SWS:NREP 1 BL:SWS:REP 106->357|PELB_ERWCH|5e-34|35.7|244/375| SEG 6->25|trrlastlataavvtagltl| SEG 37->62|atgyaalnggttggaggqvvrattgt| SEG 370->394|dpgnpdpgnpdpgnpdpgtppggtn| SEG 468->482|tgavlatgtgagvit| BL:PDB:NREP 1 BL:PDB:REP 63->357|2qx3A|2e-36|34.5|290/330| RP:PDB:NREP 1 RP:PDB:REP 73->359|2bspA|7e-17|22.9|280/399| RP:PFM:NREP 1 RP:PFM:REP 105->281|PF00544|9e-20|42.6|169/187|Pec_lyase_C| HM:PFM:NREP 2 HM:PFM:REP 76->281|PF00544|1.5e-40|32.8|189/201|Pec_lyase_C| HM:PFM:REP 404->503|PF00754|1.6e-07|19.0|100/129|F5_F8_type_C| RP:SCP:NREP 2 RP:SCP:REP 64->357|1jrgA|2e-44|24.9|285/354|b.80.1.1| RP:SCP:REP 395->510|1gqpA|4e-07|13.8|116/180|b.18.1.9| HM:SCP:REP 34->358|1o88A_|3.9e-77|36.9|317/0|b.80.1.1|1/1|Pectin lyase-like| HM:SCP:REP 389->510|1tvgA_|2.8e-10|28.7|122/0|b.18.1.9|1/1|Galactose-binding domain-like| OP:NHOMO 208 OP:NHOMOORG 82 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------24----------5--1222----------------------------1-1------------------------------------------1-------------------------------------------13---1---------------123311----------------------------------------------------------1----------------------------------------------------1-----------1-------1-2---3----------------------1--------------------------------------------------------1-----------------------------------------------------------------------1-----------------------------------------------------------------------------------------------3----------------------------------4---------------------------------------55------------------------------------55--------------------------------------------------------1----------------------------7-------1-----------------------------------23233111-------------------------------------------------------111----- ---------------1224211-2322-------------------31--67679A254111-----------------------------1214--------------------------------------------------------------------------------------------14-14------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 303 STR:RPRED 59.2 SQ:SECSTR ##############################################################HHHHHHHHHcHHHHcHHHHccccccHcHHHHHHHHHHHHHHHHHEEEccccEEEEEcTTccEEEccEEEEEccEEEEEEccEEEccccccTcEEEcccccEEEEccEEEEEEccEEEcTTccGccccccEEEETTcEEEEEEccEEEEEEEccEEcccTTcGGGTcEEEEccEEEEEEEcccEEccccEEEEccEEEccTTccEEEcTTcccEEEccEEEcTTcccGGGEEcTTccccEEEccEETTEEcHHHcccHHHHTTcccccccccccccccccHHHHHHHHHHHccTTcccccccGG################################################################################################################################################### DISOP:02AL 1-3, 362-376| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccEEcccccEEEEEEcHHHHHHHHHccccccccEEEEEEEEEEcccccccccccEEEcccEEEEEEcccEEEEEEcccEEEEEEEEEEEEEcEEEEEEEEEEccccccccccccccEEEEcccccEEEEEEEEEEEccccccccccEEEEcccccEEEEEEEEEEcccEEEEEccccccccccEEEEEEEEEEcccccccEEEccEEEEEEEEEEcccccEEEEccccEEEEEEEEEEccccEEEccccccEEEEEEcccEEEccccccccccccccccccccEEEccccEEEEcccHHHHHHHHHHHccccEEcccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccccccccccEEEEccccccEEEEEEcccEEEEEEEEEEcccccccccEEEEEEccccEEEEccccEEEEEEccEEEEEEEEEEEcccccccEEEEEEEcc //