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Thermobifida fusca YX (tfus0)
Gene : AAZ56251.1
DDBJ      :             GGDEF
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  643/915 : Eukaryota  8/199 : Viruses  0/175   --->[See Alignment]
d.58.29
:448 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   265->423 1w25A PDBj 6e-24 39.6 %
:RPS:PDB   265->388 3btaA PDBj 5e-46 12.4 %
:RPS:SCOP  271->425 1w25A3  d.58.29.2 * 2e-34 38.7 %
:HMM:SCOP  270->425 1w25A3 d.58.29.2 * 1.7e-55 50.0 %
:RPS:PFM   268->421 PF00990 * GGDEF 4e-33 45.5 %
:HMM:PFM   265->422 PF00990 * GGDEF 1.3e-48 44.9 158/161  
:BLT:SWISS 265->423 YCDT_ECOLI 6e-24 39.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56251.1 GT:GENE AAZ56251.1 GT:PRODUCT GGDEF GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2609487..2610833) GB:FROM 2609487 GB:TO 2610833 GB:DIRECTION - GB:PRODUCT GGDEF GB:PROTEIN_ID AAZ56251.1 GB:DB_XREF GI:71916349 InterPro:IPR000160 LENGTH 448 SQ:AASEQ MTLTRHSTTESTCRVLFRPREWALLTQPRAVVGFVVTLVAVDALLAIAGVWTTALRSAELLTAAAIVMSGAICVEAMRRLGLPQGMVRDLLGTWWIPVVLLLPPVYSLIVPIPLYLLMQYRIQRAVVFRRVFSAAVVALAGFSSSTVFHALIPGPIILLDGVTGAAGKSALISGEGIGAAILCAVLFTVCNTVLITGAIRMSVPEEPRRTTVWDSESLLLDAVEVCVGLIVSLLCALSLFLLLVALPPVLLLQRSLLFQQLQTAARTDPKTGLLNAVAWERVAKTELTRALRTGCPLAVLIIDIDHFKKVNDTHGHLVGDQVLLNVATMLSQQLRPYDVIGRFGGEEFVVLLPGADMAEACRTAERLRTQVGRMAQPINDITITVTVSIGVALLRVHGRDLLELMAAADLALYRAKDSGRDRVCLPVATTAGVPVRSVTDPPTDSRGS GT:EXON 1|1-448:0| BL:SWS:NREP 1 BL:SWS:REP 265->423|YCDT_ECOLI|6e-24|39.5|157/452| TM:NTM 6 TM:REGION 28->50| TM:REGION 56->77| TM:REGION 95->117| TM:REGION 135->157| TM:REGION 179->201| TM:REGION 224->246| SEG 30->50|avvgfvvtlvavdallaiagv| SEG 96->114|ipvvlllppvyslivpipl| SEG 124->140|ravvfrrvfsaavvala| SEG 229->262|livsllcalslflllvalppvlllqrsllfqqlq| SEG 400->412|dllelmaaadlal| BL:PDB:NREP 1 BL:PDB:REP 265->423|1w25A|6e-24|39.6|159/454| RP:PDB:NREP 1 RP:PDB:REP 265->388|3btaA|5e-46|12.4|121/1277| RP:PFM:NREP 1 RP:PFM:REP 268->421|PF00990|4e-33|45.5|154/160|GGDEF| HM:PFM:NREP 1 HM:PFM:REP 265->422|PF00990|1.3e-48|44.9|158/161|GGDEF| RP:SCP:NREP 1 RP:SCP:REP 271->425|1w25A3|2e-34|38.7|155/162|d.58.29.2| HM:SCP:REP 270->425|1w25A3|1.7e-55|50.0|156/0|d.58.29.2|1/1|Nucleotide cyclase| OP:NHOMO 8026 OP:NHOMOORG 651 OP:PATTERN -------------------------------------------------------------------- GA34A---111---15211-1F22--11111-84546E65CB8Tm-------635-----872-A4J4333---------9-68AJ66--------------------1----------------11111111161CCC9911194kSRFJJ123DD---2--8H9-CCH3------------K7954881592666664672676667-22232666486B1DE333333AC-1111111111111111111-12--------3311-1--11-------------------------------------------------1BA5G77777777673B554445648--7665BGFGD66598521442--B386883-----27VPQ97HXNHSV3466356456H-UTIPP9MLAS5-GNNMRRKQRWFBSF6B8292AD79784--------CDD3-fAR11111111111111111111111-11111-87FA3AA841HDFFHGE8887CCPX999938IRODMEO-3MLKVIYLNV11o97SRYUIUXaK-------36EJko4IRGJINP8nSLKP1KHLZHOFYQ8878B666D555-11111----------RBHMA43YVGWbUlIiQfndfgfbjYfeeTcYYUSuo---AYEe------CGHC3I7DDDCDCCCEB-BDCED89CDCCBCCDDCCCCFCCD--18489888888788897C7866469--E34444433444---Q-----EGEEFAlDi---------------8788827-1-GWPOOOXWYWbYVVVPUUX-----1---TNQQQWWVVUTXRkjLNMQMQNFGJ1111--Z27766DD---1--11516-------------------------5725559765-1- -----------------------------------------------------------------------------------------------1--------------------------------------------------------------1----4---------62----------1--8-----6---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 172 STR:RPRED 38.4 SQ:SECSTR #######################################################################################################################################################################################################################################################################EHHHHHHHHHHHHHHTcHHHHHHHHHHHHccccccTTEEccTTcccccGGGEEEEEcTTccEEEEEccEEEEEccccTTccEEccccccccTTTccccccEEEEcHcccEEcEEccccGGGTcTTEEEEEEccccccTHHHHHHHHHHHHHHHTTTcccEEEHHHHHHHHHH############# DISOP:02AL 1-7, 429-448| PSIPRED cccccccccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccccccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHHcccEEccEEEEEEEEEEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHcccccccccc //