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Thermobifida fusca YX (tfus0)
Gene : AAZ56339.1
DDBJ      :             helix-turn-helix motif
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  14/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.35.1
:292 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   12->73 2b5aA PDBj 2e-07 17.7 %
:RPS:SCOP  12->90 1xwrA1  a.35.1.9 * 2e-08 20.5 %
:HMM:SCOP  11->77 1y9qA1 a.35.1.8 * 1.8e-07 29.9 %
:HMM:PFM   23->73 PF01381 * HTH_3 9.6e-06 35.3 51/55  

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56339.1 GT:GENE AAZ56339.1 GT:PRODUCT helix-turn-helix motif GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2713363..2714241) GB:FROM 2713363 GB:TO 2714241 GB:DIRECTION - GB:PRODUCT helix-turn-helix motif GB:PROTEIN_ID AAZ56339.1 GB:DB_XREF GI:71916437 InterPro:IPR001387 LENGTH 292 SQ:AASEQ MNVAQPEPGSGPTVRRMLLGSQLRRLREAKGISRADAAYKIRGSESKISRIELGRVGFKTRDVEDLLTFYGVEDEAVRDSFLKLAREANEPGWWQQYGDSLPSWFQSYVGMEEAATQLRVYETQFVPGLLQTEDYARAVVTRGGRKKLDDAARHRIATRMRRQERIRKNHNVKLWVIIDEPAVRRPVGTPEVMRAQLEHLYDLSMAPNITLQIVPFHQGVFAAETGSFTILRYPEYDLPDVVYVEQLTSCLFQEKRADVEQYTMTLEWLAVVAERPDQTRKMLQKMIKELEE GT:EXON 1|1-292:0| RP:PDB:NREP 1 RP:PDB:REP 12->73|2b5aA|2e-07|17.7|62/77| HM:PFM:NREP 1 HM:PFM:REP 23->73|PF01381|9.6e-06|35.3|51/55|HTH_3| RP:SCP:NREP 1 RP:SCP:REP 12->90|1xwrA1|2e-08|20.5|73/79|a.35.1.9| HM:SCP:REP 11->77|1y9qA1|1.8e-07|29.9|67/0|a.35.1.8|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 216 OP:NHOMOORG 14 OP:PATTERN -------------------------------------------------------------------- ----6-------------------------------B----657----------------JK--N9QQPIF---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 132 STR:RPRED 45.2 SQ:SECSTR cccccccccTTHHHHHHHHHHHHHHHHHHTTccHHHHHHHHTccHHHHHHHHTTcccccHHHHHHHHHHTTcccHHHHHHHHHHHcccccccHHHHHHHHHcGGGHHHHHHHHGGGTTccHHHHHHHHHHHH################################################################################################################################################################ DISOP:02AL 1-12, 290-292| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccEEEEEEEEccccccccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEcccHHHHHHHHHHHHHHHccccEEEEEEEccccccccccccEEEEEccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcc //