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Thermobifida fusca YX (tfus0)
Gene : AAZ56356.1
DDBJ      :             putative transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  463/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.80.1
:315 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   23->93 3iwfB PDBj 1e-06 31.4 %
:BLT:PDB   134->257 1vimC PDBj 5e-10 28.0 %
:RPS:PDB   28->287 2cvpA PDBj 1e-30 9.7 %
:RPS:SCOP  28->99 2o3fA1  a.4.1.20 * 5e-20 26.4 %
:RPS:SCOP  120->302 1jeoA  c.80.1.3 * 5e-30 17.5 %
:HMM:SCOP  96->306 1nriA_ c.80.1.3 * 1.9e-42 29.5 %
:RPS:PFM   28->95 PF01418 * HTH_6 2e-13 45.6 %
:RPS:PFM   151->277 PF01380 * SIS 1e-12 37.6 %
:HMM:PFM   154->281 PF01380 * SIS 3.6e-30 31.5 127/131  
:HMM:PFM   27->132 PF01418 * HTH_6 7e-25 31.7 101/107  
:BLT:SWISS 29->302 Y211_THETN 2e-51 41.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56356.1 GT:GENE AAZ56356.1 GT:PRODUCT putative transcriptional regulator GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 2733365..2734312 GB:FROM 2733365 GB:TO 2734312 GB:DIRECTION + GB:PRODUCT putative transcriptional regulator GB:PROTEIN_ID AAZ56356.1 GB:DB_XREF GI:71916454 LENGTH 315 SQ:AASEQ MNQMAKRSDNDGVLPPKEGGATPSTVLKIRSLLPSLAPAEQRVAQRIIDDPEGVANSSITQLARDCDTSEATVIRFCRTIDFAGYRELRLRLASEAGQARGARGSVQELTGDINPDDTLVTVVQKIAYADARAVEDTGSQLDIETLQRVIELLDGARRIDIYGVGASAFVASDFQQKLHRIGMISHAWTDAHAMLTSAAVLRPGDVAVGISHSGSTSDTVGALAEARRKGASTIAITNFPRSPISEVSDHILTTAARETTFRSGATASRLAQLTVIDCVFVGLAQLRYADTREALEATYEAVRGLRISREERRRS GT:EXON 1|1-315:0| BL:SWS:NREP 1 BL:SWS:REP 29->302|Y211_THETN|2e-51|41.6|267/282| SEG 306->314|risreerrr| BL:PDB:NREP 2 BL:PDB:REP 23->93|3iwfB|1e-06|31.4|70/88| BL:PDB:REP 134->257|1vimC|5e-10|28.0|118/190| RP:PDB:NREP 1 RP:PDB:REP 28->287|2cvpA|1e-30|9.7|247/557| RP:PFM:NREP 2 RP:PFM:REP 28->95|PF01418|2e-13|45.6|68/102|HTH_6| RP:PFM:REP 151->277|PF01380|1e-12|37.6|125/131|SIS| HM:PFM:NREP 2 HM:PFM:REP 154->281|PF01380|3.6e-30|31.5|127/131|SIS| HM:PFM:REP 27->132|PF01418|7e-25|31.7|101/107|HTH_6| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF01418|IPR000281| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01418|IPR000281| GO:PFM GO:0005529|"GO:sugar binding"|PF01380|IPR001347| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF01380|IPR001347| RP:SCP:NREP 2 RP:SCP:REP 28->99|2o3fA1|5e-20|26.4|72/83|a.4.1.20| RP:SCP:REP 120->302|1jeoA|5e-30|17.5|177/177|c.80.1.3| HM:SCP:REP 96->306|1nriA_|1.9e-42|29.5|210/0|c.80.1.3|1/1|SIS domain| OP:NHOMO 1087 OP:NHOMOORG 471 OP:PATTERN -----------------------------1----1------------------------1-------- -1--2---111--------------2-----------112-13-16---1-11-1--4--21-11211311----21111-------------------------------------------------------------------------------------------------------12---11---11121222222322223322412222-211132332225113333333333333331132721-64--31355--4621511133311111111--211222121211111111111111122---22252211C333333223-141112222111--111-----------2141--1----11------1-1-1--------22222221223--------112--3113111111322-11--14------1--------1-----1-11-----------------------------1---1-1-34444443555543445545454533243--5432-21121332511-----1-1111111-----------------------------------------------------------------21311-1-2-11211111111111111111-------------63124424334444433-3444546344343444445555222344533333333434334533333331-544344444444----11111-----1332111-21111112232----------3122223333222222233----------3334333332224411---------------1----------------1----------1---------------321-24222--- --------------------------------------------------------------------------------------------------------------------------------------------------------------2----1------1--1--------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 283 STR:RPRED 89.8 SQ:SECSTR ######################ccHHHHcTTHHHHTEEEEEccccEEEccccHHHHHHHHHHHHHTTHHHHHHHHHTTccccTTTTccccHHHHHHHHHHHHHHHHHTcTTccccEETTEEcHHHHHHHHHHHHHHHHHHHTTccccTTcccccEEEEEccGGGTHHHHHHHHHTGGGGTTccEEEEccHHHHHHHHTTccTTcEEEEEEccccccHHHHHHHHHHHHHHHHHHccGGGGGGTEEEEEccHHHHHHHTccGTccGGGcTTTGGGHHHHHHHcHHHHHHHHHHHHHHHHHHHHHTH########## DISOP:02AL 1-28, 102-108, 298-300, 303-315| PSIPRED ccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHccHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEccccccHHHHccEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHccc //