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Thermobifida fusca YX (tfus0)
Gene : AAZ56414.1
DDBJ      :             ATPaseDEAD/DEAH box helicase, N-terminal
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  99/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:569 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   16->171 3dmqA PDBj 7e-08 23.4 %
:RPS:SCOP  16->171 2fwrA2  c.37.1.19 * 4e-12 28.1 %
:HMM:SCOP  16->238 1z3iX2 c.37.1.19 * 2.7e-29 26.9 %
:HMM:SCOP  235->410 2j0sA2 c.37.1.19 * 1.7e-08 22.0 %
:RPS:PFM   42->171 PF00176 * SNF2_N 6e-04 26.4 %
:HMM:PFM   16->169 PF04851 * ResIII 3.5e-14 24.0 146/184  
:HMM:PFM   319->370 PF00271 * Helicase_C 2.8e-05 21.2 52/78  
:BLT:SWISS 1->562 Y1624_MYCLE e-150 49.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56414.1 GT:GENE AAZ56414.1 GT:PRODUCT ATPaseDEAD/DEAH box helicase, N-terminal GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2804434..2806143) GB:FROM 2804434 GB:TO 2806143 GB:DIRECTION - GB:PRODUCT ATPaseDEAD/DEAH box helicase, N-terminal GB:PROTEIN_ID AAZ56414.1 GB:DB_XREF GI:71916512 InterPro:IPR003593 InterPro:IPR011545 LENGTH 569 SQ:AASEQ MTLLQTTSTDDRLRGLRHWQREAFEEYFRREPRDFLAVATPGAGKTTFALTLASELLARHVVRSITVVCPTEHLKKQWAEAAARFNIPLDPDFKNSQGALGKHFIGAAVTYAQVAAHPALHRNRTEARRTLVIFDEIHHAGDSLSWGEAIREAFDPATRRLCLTGTPFRSDTNPIPFVSYVQDHTGVRRCSWDYNYGYGPALADGVVRPVIFLAYSGEMRWRTRAGEELAARLGEELTQDALSQAWRAALDPKGDWIKRVLAAADRRLTEVRKHTPDAGGLVIASDHENARAYARILRQITGRGATVVLSDDPTASRKISQFAESDDRWMVAVKMVSEGVDVPRLMVGVYATSTSTPLFFAQAVGRFVRVRRRGEIASVFLPSIPVLLEYASEMERERDHVLDKPIREDDGFVPEQELINEARKKRDTPDAGDELPFETMESEAEFDRALYDGGEIGGGEPDEEDFLGLPGLLEPDQVAVLLRKRRQERARTARSEPQQRERPEHEVLAELRRELNSLVGAWHHRTGQPHATIHTTLRRVCGGPPVAQATAEQLRQRIAKLRAWAVGAE GT:EXON 1|1-569:0| BL:SWS:NREP 1 BL:SWS:REP 1->562|Y1624_MYCLE|e-150|49.3|558/596| SEG 224->237|rageelaarlgeel| SEG 359->374|ffaqavgrfvrvrrrg| SEG 452->465|dggeigggepdeed| SEG 483->494|rkrrqerartar| RP:PDB:NREP 1 RP:PDB:REP 16->171|3dmqA|7e-08|23.4|154/938| RP:PFM:NREP 1 RP:PFM:REP 42->171|PF00176|6e-04|26.4|129/265|SNF2_N| HM:PFM:NREP 2 HM:PFM:REP 16->169|PF04851|3.5e-14|24.0|146/184|ResIII| HM:PFM:REP 319->370|PF00271|2.8e-05|21.2|52/78|Helicase_C| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00176|IPR000330| GO:PFM GO:0005524|"GO:ATP binding"|PF00176|IPR000330| RP:SCP:NREP 1 RP:SCP:REP 16->171|2fwrA2|4e-12|28.1|139/234|c.37.1.19| HM:SCP:REP 16->238|1z3iX2|2.7e-29|26.9|208/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 235->410|2j0sA2|1.7e-08|22.0|164/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 103 OP:NHOMOORG 99 OP:PATTERN -------------------------------------------------------------------- ----111111111111111-11111111111111111111-11111111111111111--11111121111--------------------------------------------------------------------------------------11111-------1--1-----1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------------------21----2--111-11--1---211-1-----------------------------------------------------------------------------------------------------------------1--------------------------1--1----------1-------------1-11-----11111------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 160 STR:RPRED 28.1 SQ:SECSTR ###########HHccccHHHHHHHHHHHHccccEEEEcccTTccHHHHHHHHHHHHHTcccccEEEEEccTHTTHHHHHHHHHHcccccHHHHHHTTccccTTccEEEEcHHHHHTcTTTTHHHHTccccEEEEccccccccccHHHHHHHHHHTTcccEEEccccccccc############################################################################################################################################################################################################################################################################################################################################################################################################## DISOP:02AL 415-438, 487-509, 568-569| PSIPRED ccccccccccHHcccccHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHHHHHHHHccccccEEEccccccccccccEEEEEHHHHHHHHHHHHHHcccccEEEEEEHHHHccccHHHHHHHHHHcccccEEEEEEccccccccHHHHHHHHHccHHHHHHHHHHHcccHHHHHHcccccccEEEEEccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHHHHHcccEEEEEEcccHHHHHHHHHHHcccccEEEEEcHHHcccccccccEEEEEcccccHHHHHHHHHHHHcccccccEEEEEEEccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcHHHHHccccccccccHHccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHccEEEccccHHHHHHHHHHHHHHHHHHHHccccc //