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Thermobifida fusca YX (tfus0)
Gene : AAZ56454.1
DDBJ      :             transcription termination factor Rho
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  785/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
a.140.2a.35.1b.40.4c.37.1
:644 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   275->631 1pvoB PDBj e-109 57.8 %
:RPS:PDB   267->632 2ck3D PDBj 6e-67 17.7 %
:RPS:SCOP  52->86 1y02A1  a.140.2.1 * 1e-05 20.0 %
:RPS:SCOP  273->347 1a62A2  b.40.4.5 * 1e-14 47.2 %
:RPS:SCOP  320->585 1bmfD3  c.37.1.11 * 5e-52 20.8 %
:RPS:SCOP  564->626 1x2lA1  a.35.1.7 * 2e-11 17.5 %
:HMM:SCOP  308->591 1e79A3 c.37.1.11 * 2.8e-75 37.3 %
:RPS:PFM   54->86 PF07498 * Rho_N 2e-05 60.6 %
:RPS:PFM   274->347 PF07497 * Rho_RNA_bind 4e-21 60.6 %
:RPS:PFM   379->578 PF00006 * ATP-synt_ab 5e-09 26.8 %
:HMM:PFM   378->583 PF00006 * ATP-synt_ab 3.7e-40 22.4 201/215  
:HMM:PFM   273->347 PF07497 * Rho_RNA_bind 1.3e-22 47.2 72/78  
:HMM:PFM   49->85 PF07498 * Rho_N 1.3e-12 43.2 37/43  
:HMM:PFM   89->236 PF01034 * Syndecan 0.00054 23.1 147/328  
:BLT:SWISS 54->82,260->644 RHO_STRLI 0.0 84.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56454.1 GT:GENE AAZ56454.1 GT:PRODUCT transcription termination factor Rho GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2840551..2842485) GB:FROM 2840551 GB:TO 2842485 GB:DIRECTION - GB:PRODUCT transcription termination factor Rho GB:PROTEIN_ID AAZ56454.1 GB:DB_XREF GI:71916552 InterPro:IPR003593 InterPro:IPR004665 InterPro:IPR011129 LENGTH 644 SQ:AASEQ MSDTTELHQDAAVGTQDTTSSKVDVGDAAPPAGKSASTRSRSRSGGTGLAALKLTELQRLASDLGITGTGRMRKSEIIAAIEAKQGGPVSAPETTTAKTAETASTTAAKKKESAATTEDPATEPAAEKADKTTEKTATESAEKPERTRRRSRRRSGEETAETPAAESSDTTESAKEDATASAPAETEKTTTAQPAQNGQNGTRERRRRSRNRDGGSDQQASQQQNGTKSDSDDEEYSGGSRRRGRRRDRRDRRNRERADQEPVISEDDVLLPVAGILDILDNYAFVRTTGYLPGPNDVYVSLAQVRKYGLRKGDAITGAVRQPREGERREKFNALVRLDSVNGMPPERARNRPEFSKLVPLYPQERLRLETEPHILTTRIIDLISPIGKGQRGLIVSPPKAGKTTVLQAIANAITQNNPECHLMVVLVDERPEEVTDMQRTVKGEVIHSTFDRPAEDHTTVAELAIERAKRLVEMGLDVVVLLDSITRLGRAYNLSAPASGRILSGGVDSTALYPPKRFFGAARNIENGGSLTILATALVETGSRMDEVIFEEFKGTGNMELKLSRSLADKRLFPAVDIEASSTRKEEILLSPEELNIIWKLRRVLHALDTQQALELVLSKLKKTKSNAEFLLQVQKTTIGPND GT:EXON 1|1-644:0| BL:SWS:NREP 1 BL:SWS:REP 54->82,260->644|RHO_STRLI|0.0|84.9|414/707| SEG 35->51|sastrsrsrsggtglaa| SEG 93->176|etttaktaetasttaakkkesaattedpatepaaekadkttektatesaekpertrrrsrrrsgeetaetpaaessdttesake| SEG 196->224|qngqngtrerrrrsrnrdggsdqqasqqq| SEG 229->257|sdsddeeysggsrrrgrrrdrrdrrnrer| BL:PDB:NREP 1 BL:PDB:REP 275->631|1pvoB|e-109|57.8|348/358| RP:PDB:NREP 1 RP:PDB:REP 267->632|2ck3D|6e-67|17.7|362/467| RP:PFM:NREP 3 RP:PFM:REP 54->86|PF07498|2e-05|60.6|33/42|Rho_N| RP:PFM:REP 274->347|PF07497|4e-21|60.6|71/75|Rho_RNA_bind| RP:PFM:REP 379->578|PF00006|5e-09|26.8|194/212|ATP-synt_ab| HM:PFM:NREP 4 HM:PFM:REP 378->583|PF00006|3.7e-40|22.4|201/215|ATP-synt_ab| HM:PFM:REP 273->347|PF07497|1.3e-22|47.2|72/78|Rho_RNA_bind| HM:PFM:REP 49->85|PF07498|1.3e-12|43.2|37/43|Rho_N| HM:PFM:REP 89->236|PF01034|0.00054|23.1|147/328|Syndecan| GO:PFM:NREP 6 GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07498|IPR011112| GO:PFM GO:0006353|"GO:transcription termination"|PF07498|IPR011112| GO:PFM GO:0003715|"GO:transcription termination factor activity"|PF07497|IPR011113| GO:PFM GO:0003723|"GO:RNA binding"|PF07497|IPR011113| GO:PFM GO:0006353|"GO:transcription termination"|PF07497|IPR011113| GO:PFM GO:0005524|"GO:ATP binding"|PF00006|IPR000194| RP:SCP:NREP 4 RP:SCP:REP 52->86|1y02A1|1e-05|20.0|35/44|a.140.2.1| RP:SCP:REP 273->347|1a62A2|1e-14|47.2|72/78|b.40.4.5| RP:SCP:REP 320->585|1bmfD3|5e-52|20.8|260/276|c.37.1.11| RP:SCP:REP 564->626|1x2lA1|2e-11|17.5|63/87|a.35.1.7| HM:SCP:REP 308->591|1e79A3|2.8e-75|37.3|268/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1427 OP:NHOMOORG 788 OP:PATTERN -------------------------------------------------------------------- 1122211111111111111-111111111111111111112111211121121211111111212112221111111111111113221111111111111111111131222222222222222111111111112221111-12----11-----------1-------------------11111111222111112222122222222212122222222223332222111111111111111111111----------11-----11--------------------------------------------------22222222222232322222111222111211211222222222222211323211211111224222222322322222222122-22222132332232223342222221222222222222211111111111211222222222211111111111111111111111122122221322243233312232444414123322211223223111112312223121421111111112122223122112222223222222232333331212222122222222222222221221112412222222224232422222322323321-1222211111132133242442222222-43223322224241221121113343344444444444444442122322352444444344343113111111222211413111111111111111111-1111112133232222322222343111111111222232222224222223333333411-111221111112222222222-----------------1---2----2122222222132 --------------------------------------------------------------------------------------------------------------------------------------------------------------2--------------------------1--------2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 14-48, 82-267, 642-644| PSIPRED cccHHHcccccccccccccHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEEEEHHHccccccEEEEEEcccccccccccEEEEcEEccccccccEEEccEEEEEEcccccccccccccccccccccccHHcccccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHcEEEEEEcccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHccccccccEEEEEEEEEEcccccccccHHHHHHHHEEEEEEEEHHHHHccccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccc //