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Thermobifida fusca YX (tfus0)
Gene : AAZ56485.1
DDBJ      :             succinate dehydrogenase subunit A
Swiss-Prot:             

Homologs  Archaea  57/68 : Bacteria  754/915 : Eukaryota  182/199 : Viruses  0/175   --->[See Alignment]
a.7.3c.3.1d.168.1
:646 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   77->607 1kf6A PDBj 7e-50 29.9 %
:RPS:PDB   71->645 2bs2A PDBj 2e-47 23.8 %
:RPS:SCOP  75->263 1e7pA2  c.3.1.4 * 6e-46 33.5 %
:RPS:SCOP  271->412 3cirA3  d.168.1.1 * 3e-18 28.7 %
:RPS:SCOP  383->499 1e7pA2  c.3.1.4 * 5e-22 23.3 %
:RPS:SCOP  503->645 1nekA1  a.7.3.1 * 6e-33 16.8 %
:HMM:SCOP  22->499 1jnrA2 c.3.1.4 * 8.3e-50 26.9 %
:HMM:SCOP  502->645 1nekA1 a.7.3.1 * 3.4e-43 38.8 %
:RPS:PFM   77->450 PF00890 * FAD_binding_2 1e-44 41.0 %
:RPS:PFM   512->603 PF02910 * Succ_DH_flav_C 4e-14 37.4 %
:HMM:PFM   45->450 PF00890 * FAD_binding_2 1.2e-58 34.4 366/421  
:HMM:PFM   511->645 PF02910 * Succ_DH_flav_C 1e-32 32.3 127/129  
:BLT:SWISS 78->645 DHSA_BACSU 2e-84 35.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56485.1 GT:GENE AAZ56485.1 GT:PRODUCT succinate dehydrogenase subunit A GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2881162..2883102) GB:FROM 2881162 GB:TO 2883102 GB:DIRECTION - GB:PRODUCT succinate dehydrogenase subunit A GB:PROTEIN_ID AAZ56485.1 GB:DB_XREF GI:71916583 InterPro:IPR011280 LENGTH 646 SQ:AASEQ MTELYTEGAPIRDEKAPDGPIAERWDKRRFSARLVNPANRRKLSIIIVGTGLAGASAAATLGEAGYNIKSFCYQDSPRRAHSIAAQGGINAAKNYRNDGDSIYRLFYDTVKGGDYRARESNVYRLAQVSVEIIDQCVAQGVPFAREYGGLLDNRSFGGVQVSRTFYARGQTGQQLLLGAYQALERQVAAGTVEMYTRHEMLDLIVVDGRARGIIVRDMVTGEIETHFADAVVLATGGYGNVFFLSTNAMGSNVTAIWRAHRKGAFFANPCFTQIHPTCIPVSGTYQSKLTLMSESLRNDGRIWVPKKKGDTRDPRDIPEEERDYYLERMYPAFGNLVPRDIASRAAKRVCDEGRGVGPGGLGVYLDFADAIKRMGRDAVEAKYGNLFDMYERITGENPYEVPMRIYPAVHYTMGGLWVDYDLQSTIPGLFVIGEANFSDHGANRLGASALMQGLADGYFVLPNTINDYLADGPFEKIDENHPEVKEAVEGVRARLEKLLSINGSRTVDSFHRELGKIMWDYCGMERTEEGLRKAITLIRELRDEFWRDVKVTGVNEELNQTLERAHRVADFMELAELMCIDALHRRESCGGHFRAESQTEDGEALRHDDEFAYVAAWEFTGVGEPPVLHKEALEYEYVEMKQRSYK GT:EXON 1|1-646:0| BL:SWS:NREP 1 BL:SWS:REP 78->645|DHSA_BACSU|2e-84|35.6|539/586| SEG 49->65|gtglagasaaatlgeag| SEG 167->183|argqtgqqlllgayqal| SEG 353->362|grgvgpgglg| BL:PDB:NREP 1 BL:PDB:REP 77->607|1kf6A|7e-50|29.9|501/577| RP:PDB:NREP 1 RP:PDB:REP 71->645|2bs2A|2e-47|23.8|543/655| RP:PFM:NREP 2 RP:PFM:REP 77->450|PF00890|1e-44|41.0|334/375|FAD_binding_2| RP:PFM:REP 512->603|PF02910|4e-14|37.4|91/114|Succ_DH_flav_C| HM:PFM:NREP 2 HM:PFM:REP 45->450|PF00890|1.2e-58|34.4|366/421|FAD_binding_2| HM:PFM:REP 511->645|PF02910|1e-32|32.3|127/129|Succ_DH_flav_C| GO:PFM:NREP 4 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00890|IPR003953| GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF02910|IPR004112| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02910|IPR004112| RP:SCP:NREP 4 RP:SCP:REP 75->263|1e7pA2|6e-46|33.5|185/336|c.3.1.4| RP:SCP:REP 271->412|3cirA3|3e-18|28.7|94/96|d.168.1.1| RP:SCP:REP 383->499|1e7pA2|5e-22|23.3|113/336|c.3.1.4| RP:SCP:REP 503->645|1nekA1|6e-33|16.8|137/138|a.7.3.1| HM:SCP:REP 22->499|1jnrA2|8.3e-50|26.9|331/357|c.3.1.4|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 502->645|1nekA1|3.4e-43|38.8|134/0|a.7.3.1|1/1|Succinate dehydrogenase/fumarate reductase flavoprotein C-terminal domain| OP:NHOMO 1876 OP:NHOMOORG 993 OP:PATTERN 11-1-12222122222-2112211211322111111111111111111-----1--111111111-11 2321511111111123344-43223344444333232323132222212111331313--333222345321111222-1-222222222222122---21311121233111-11111111111333333323332222211-3122231122122222111222222231221222211-2221111111222222222222222221122222222221111111-1-2211111111111111111111----------------------------------------------------------------------11-11---------1111111111-1--2112222123-123----1-1-222122211111231322221111111111111112-21111222232122222222222223212121212211211111111122-22111121111111111111111111111111112222111113222222222223323222212222232222333222222222333232221332222222222223221222222322221222232222332333242221122221112111111134434113322222222334444243333433334331-12232------33332323333333333-333333333333233333333333332333333333333333332232222213333333333331122222222222222121111111111-11112222222122222222222222222222222222222223333333333333311111111112222113-332222----------------------------------------------222 11--111-311-11132211111121122111111122221222221111111111111111112111-2111112212212222211-12121141111111212-1--2211122111-12-12-112C1-2221111111---111111-11221113113111411922111222X2221232641322232221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 575 STR:RPRED 89.0 SQ:SECSTR ######################################################################EEccccGGGcGGGGccccEEccccccGGGccHHHHHHHHHHHTTTcccHHHHHHHHHHHHHHHHHHHHTTccccccccEEEEccccccccEEEEcGcEEccTTcHHHHHHHHHHHHHHHHTcEEEccEEEEEEEEETTEEEEEEEEETTTccEEEEEccEEEEcccccGGGcccccccTTcccHHHHHHHTTccccEEcTTcEEEEccccTTTccccHHccccHHHHTTcccccTHHHHHTcEEEcTGccccccTccccHHHHcTTTGGGccHHHHHHHHHHHHHTTTccccTTccEEEEcGGGcHHHHHHHcHHHHHHHHHTccccTTTccEEEccEEEEEccEEEccTTccccccTEEEcGGEEccccTTcccTTHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHcHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHTcTcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccTTcccTTcccEETTTccEEccccEEEEcccTTccccEEEEEEcGGGcccccccccc# PSIPRED cEEEEEcccccccccccccHHHHHHHcccccccccccHHHccccEEEEcccHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHccHHHHcccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEccccccccEEEEEccccHHHHHHHHHHHHHHHHHHcccEEEEcEEEEEEEEEccEEEEEEEEEccccEEEEEEcccEEEEcccHHHHHccccccccccHHHHHHHHHccccEEcccEEEEEEEEEEcccccccccEEEEEEcccccEEEEcccccccccHHHcHHHHHHHHHHHccHHHHccccHHHHHHHHHHHHHHcccccccccEEEEEHHHHHHHccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccEEEccccccccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEccccccccHHHHHccHHHcccccccccccccccEEEEccccEEEEcccccccc //