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Thermobifida fusca YX (tfus0)
Gene : AAZ56527.1
DDBJ      :             hypothetical protein
Swiss-Prot:LPQB_THEFY   RecName: Full=Lipoprotein lpqB;Flags: Precursor;

Homologs  Archaea  0/68 : Bacteria  54/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.70.3c.69.1
:626 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   483->535 1cqwA PDBj 3e-04 20.0 %
:RPS:SCOP  483->535 1bn6A  c.69.1.8 * 7e-05 20.0 %
:HMM:SCOP  337->571 1n1mA1 b.70.3.1 * 1.3e-05 24.5 %
:RPS:PFM   200->302 PF10646 * Germane 5e-07 38.0 %
:RPS:PFM   343->614 PF10647 * Gmad1 4e-11 40.4 %
:HMM:PFM   337->625 PF10647 * Gmad1 1.1e-81 51.8 247/253  
:HMM:PFM   186->304 PF10646 * Germane 7.5e-25 32.1 112/117  
:BLT:SWISS 1->626 LPQB_THEFY 0.0 100.0 %
:PROS 155->166|PS00213|LIPOCALIN
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56527.1 GT:GENE AAZ56527.1 GT:PRODUCT hypothetical protein GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(2937813..2939693) GB:FROM 2937813 GB:TO 2939693 GB:DIRECTION - GB:PRODUCT hypothetical protein GB:PROTEIN_ID AAZ56527.1 GB:DB_XREF GI:71916625 InterPro:IPR002345 LENGTH 626 SQ:AASEQ MIGQANRIAAAVSTACLAVLLAGCATVPTGGPTFEGRGGGAQGQVDTFTRLLPAGPQPGWGENALVRGFLKDLGSFEENHEAARLYMTEECADVWQPSDRVLVYEEMDAVRFDVETVEEERAARVRVRTPLYATIRPDGQYVPASPGEAIDVVFDLTKVDGEWRIANLPDTILLSRQDVDRVYRPLNLYYFNRDMSTLVPDPVFLPVSSAVNITEQLSQRLVTMLLDGPTDWLAPAVRTSFPAGTTATVEYSSGNVTVNLDHRAAAADPRRLFGMGAQLVWTLKQLPEIQEFTLRLDGEEVELPGVEDGVLQASSQEWNSVNPAGMTGSPRAYFLRDGQLWSLDVDQREALVPGAAGHGRILVEEHAVSLDETRVAGIMPDDDSVRVAPIAEDGEYTTVLQGGDYTSLSWDGYGNLWVVEDLSAEVAEAEREEDLADDTEPGDTAVGSTERRETDRGEKRQVTRLWLLAEDADPVEVHAPELAGVPVTELRVSRDGTRVAVLTGGADGGQVLVGRVVHGESTVSLQAFLPLARDLVTVTDLSWRGADQLAVLGQKERGAIQAYLVSLNGSGESTSAGAVTGSDMKTITAAPGMPLLSGTEEDTISSSSDRLMWRRAVEGTKPVYPG GT:EXON 1|1-626:0| SW:ID LPQB_THEFY SW:DE RecName: Full=Lipoprotein lpqB;Flags: Precursor; SW:GN Name=lpqB; OrderedLocusNames=Tfu_2494; SW:KW Cell membrane; Complete proteome; Lipoprotein; Membrane; Palmitate;Signal. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->626|LPQB_THEFY|0.0|100.0|626/626| GO:SWS:NREP 2 GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| PROS 155->166|PS00213|LIPOCALIN|PDOC00187| TM:NTM 1 TM:REGION 9->31| SEG 28->40|ptggptfegrggg| SEG 114->129|vetveeeraarvrvrt| SEG 424->440|aevaeaereedladdte| RP:PDB:NREP 1 RP:PDB:REP 483->535|1cqwA|3e-04|20.0|50/295| RP:PFM:NREP 2 RP:PFM:REP 200->302|PF10646|5e-07|38.0|100/114|Germane| RP:PFM:REP 343->614|PF10647|4e-11|40.4|228/245|Gmad1| HM:PFM:NREP 2 HM:PFM:REP 337->625|PF10647|1.1e-81|51.8|247/253|Gmad1| HM:PFM:REP 186->304|PF10646|7.5e-25|32.1|112/117|Germane| RP:SCP:NREP 1 RP:SCP:REP 483->535|1bn6A|7e-05|20.0|50/291|c.69.1.8| HM:SCP:REP 337->571|1n1mA1|1.3e-05|24.5|184/0|b.70.3.1|1/1|DPP6 N-terminal domain-like| OP:NHOMO 54 OP:NHOMOORG 54 OP:PATTERN -------------------------------------------------------------------- -----1111111111-111-1-1111111111-11111111---111111111111-1---111-111111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 50 STR:RPRED 8.0 SQ:SECSTR ##################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################cccccccEEEEETTEEEEEEEEcccccccEE##EEcc#TTccGGGGTTTHHHH########################################################################################### DISOP:02AL 1-8, 31-55, 381-394, 577-578| PSIPRED ccccHHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccEEEcccccccccccHHHHHHHHHHHHccccHHHHHHHHHccHHHHHcccccccEEEEccccccccccccccccccEEEEEEEEEEEEEccccEEEcccccccccEEEEEEEEcccEEEccccccEEEEHHHHHHccccEEEEEEcccccEEEccEEEEEccccccccccHHHHHHHHHHcccHHHcccHHHccccccEEcccEEccccEEEEEcHHHHcccHHHHHHHHHHHHHHHHcccccEEEEEEEcccEEEccccccccccccccHHHHHccccccccccEEEEEccEEEEEEccccccccccccccccHHHHHHHEEccccEEEEEEEcccccEEccccccccEEEEEccccEEcccccccccEEEEEEcccHHHHHHcccccccccccccccEEcccccccccccccccEEEEEEcccccEEEEEccccccccEEEEEEEcccEEEEEEEEccccEEEEEEEEEcccccEEEEEEEEcccccccEEEEEEccccEEEEEEccccccccEEEEEEccccccccccccccccEEEEEccccEEEEEEccHHEEEEcccccEEEEEEccccccccc //