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Thermobifida fusca YX (tfus0)
Gene : AAZ56659.1
DDBJ      :             protein translocase subunit secY/sec61 alpha
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  903/915 : Eukaryota  17/199 : Viruses  0/175   --->[See Alignment]
f.41.1
:442 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->435 2zjsY PDBj 2e-79 42.3 %
:RPS:PDB   62->442 3dinC PDBj 2e-75 23.9 %
:RPS:SCOP  57->286 1rh5A  f.41.1.1 * 3e-22 18.7 %
:HMM:SCOP  1->433 1rh5A_ f.41.1.1 * 3.7e-117 49.9 %
:RPS:PFM   75->424 PF00344 * SecY 7e-69 49.4 %
:HMM:PFM   76->426 PF00344 * SecY 5.7e-111 48.5 330/341  
:BLT:SWISS 1->442 SECY_STRGB e-145 61.4 %
:PROS 182->199|PS00756|SECY_2
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56659.1 GT:GENE AAZ56659.1 GT:PRODUCT protein translocase subunit secY/sec61 alpha GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(3097534..3098862) GB:FROM 3097534 GB:TO 3098862 GB:DIRECTION - GB:PRODUCT protein translocase subunit secY/sec61 alpha GB:PROTEIN_ID AAZ56659.1 GB:DB_XREF GI:71916757 InterPro:IPR002208 LENGTH 442 SQ:AASEQ MLGAFVRAFRTPELRNKLLFTLFILTIFRLGAVIPAPGIDSVAIEKCVQQTAETGASNIYALINLFSGGALLQLAVFALGIMPYITASIILNLLTVVVPRLEALKKEGQAGQSKITQYTRYLTIALAVLQSTSVIAMARTGQLFQNACIPEEYMPFLHTSYELPVLIMIVFVMTAGTCVIMWFGELITERGVGNGMSLLIFTQIIAEFPAGMMRIWSENPAWVFALVCVAGVVLITGVVFIEQAQRRIPVQYAKRMVGRRMYGGSSTYIPLKVNQAGVIPVIFASSLLYLPTLVVGLLGAETDNKVVDFLNTYFNPMGNHPVYLTTFFLLIVGFAFFYVAITFNPAEVADNMKKYGGFIPSIRPGRPTAEYLDYVLTRLTTPGALYLGVIALLPMVALGTSGAAANFPFGGVSILIMVGVGLDTVKQIESHLQQRNYEGFLR GT:EXON 1|1-442:0| BL:SWS:NREP 1 BL:SWS:REP 1->442|SECY_STRGB|e-145|61.4|433/437| PROS 182->199|PS00756|SECY_2|PDOC00612| TM:NTM 10 TM:REGION 18->40| TM:REGION 56->78| TM:REGION 83->104| TM:REGION 117->139| TM:REGION 163->185| TM:REGION 221->243| TM:REGION 277->299| TM:REGION 324->346| TM:REGION 380->401| TM:REGION 407->429| SEG 18->28|llftlfiltif| SEG 287->299|llylptlvvgllg| BL:PDB:NREP 1 BL:PDB:REP 1->435|2zjsY|2e-79|42.3|407/415| RP:PDB:NREP 1 RP:PDB:REP 62->442|3dinC|2e-75|23.9|360/396| RP:PFM:NREP 1 RP:PFM:REP 75->424|PF00344|7e-69|49.4|330/337|SecY| HM:PFM:NREP 1 HM:PFM:REP 76->426|PF00344|5.7e-111|48.5|330/341|SecY| GO:PFM:NREP 3 GO:PFM GO:0015031|"GO:protein transport"|PF00344|IPR002208| GO:PFM GO:0015450|"GO:P-P-bond-hydrolysis-driven protein transmembrane transporter activity"|PF00344|IPR002208| GO:PFM GO:0016020|"GO:membrane"|PF00344|IPR002208| RP:SCP:NREP 1 RP:SCP:REP 57->286|1rh5A|3e-22|18.7|203/410|f.41.1.1| HM:SCP:REP 1->433|1rh5A_|3.7e-117|49.9|383/422|f.41.1.1|1/1|Preprotein translocase SecY subunit| OP:NHOMO 985 OP:NHOMOORG 920 OP:PATTERN -------------------------------------------------------------------- 1111211111111111111-11111111111111111111111111111111121111111111111111111111111111111111111111111--1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111122222122222222211111122211111111111111111111111111111111111111111111111111111121111112221111211211211111211111111111111112111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-1-11111---1111111111111111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11122L222111234-23------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 438 STR:RPRED 99.1 SQ:SECSTR ccHHHHHHHccHHHHHHHHHHHHHHHHHHHHTTccccccc###HHH#HHHHHHccGGGTccTTHHHHcccccccccccccHHHHHHHHHHHHHHHHHccccccccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHccccccccTTcccccHHHHHHHHHHHHHHHHHHHHHHHHTTTTcTTHHHHHHHHHHHHHcTTcccccccccccTHHHHHHHHHHHHHHHHHTTcccccccccccTTTccccccccccccccccccccccccHHHHHHHHHHHHHHHTTccTTccccccTccccccccTcTTHHHHHHHHHHHHHHHHHHHHTcTTHHHHHTTccccccccccccccTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTccccccTTHHHHHHHHHHHHHHHHHHHHHcccccccTTcc DISOP:02AL 101-115, 254-267| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHcccccHHHHHHHHHHccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEcccccEEEEHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEEEEEEEEEEcccccccccccHHHHHcccccccccEEEEEEEccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccc //