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Thermobifida fusca YX (tfus0)
Gene : AAZ56717.1
DDBJ      :             NADH-plastoquinone oxidoreductase, chain 5
Swiss-Prot:             

Homologs  Archaea  46/68 : Bacteria  687/915 : Eukaryota  48/199 : Viruses  0/175   --->[See Alignment]
c.97.1d.58.34
:648 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   246->473 2c1wA PDBj 5e-22 7.9 %
:RPS:SCOP  174->292 1qd1A2  d.58.34.1 * 2e-13 14.2 %
:RPS:SCOP  321->396 1jtkA  c.97.1.1 * 2e-07 6.8 %
:RPS:PFM   85->140 PF00662 * Oxidored_q1_N 2e-07 39.3 %
:RPS:PFM   155->424 PF00361 * Oxidored_q1 3e-44 40.2 %
:RPS:PFM   522->622 PF03746 * LamB_YcsF 5e-05 35.6 %
:HMM:PFM   154->424 PF00361 * Oxidored_q1 2.8e-81 39.2 268/270  
:HMM:PFM   83->143 PF00662 * Oxidored_q1_N 1.8e-24 45.9 61/62  
:HMM:PFM   450->501 PF06455 * NADH5_C 3e-06 25.0 52/181  
:BLT:SWISS 43->631 NUOL_STRCO e-142 51.2 %
:PROS 412->426|PS00024|HEMOPEXIN
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56717.1 GT:GENE AAZ56717.1 GT:PRODUCT NADH-plastoquinone oxidoreductase, chain 5 GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(3158896..3160842) GB:FROM 3158896 GB:TO 3160842 GB:DIRECTION - GB:PRODUCT NADH-plastoquinone oxidoreductase, chain 5 GB:PROTEIN_ID AAZ56717.1 GB:DB_XREF GI:71916815 InterPro:IPR000585 InterPro:IPR003916 InterPro:IPR003918 InterPro:IPR003945 LENGTH 648 SQ:AASEQ MTSTLAAGGYAATTAADGGVLSYAWLMIALPLLGAAVLLLGGKRTNAWGHWLAIAAALSSFVWAVLSLGQLLGRAPEERSVTVHVYQWIKVGTFDIDLSLLIDPLSMTFALLITGVGSLIHIYSVGYMAHDENRRRFFAYLNLFVAAMLVLVLADNYAVLFLGWEGVGLASYLLIGFWQHKPAAAVAAKKAFLINRVGDIGLLVSIMLLFTTFGTVTFHPVFESVDGAGRGLMTAVGLLLLLGACGKSAQLPLQAWLLDAMEGPTPVSALIHAATMVTAGVYLIVRSGPIFEAAPTAQLVVTIVGAATLLAGAIIGCAKDDIKKALAGSTMSQIGYMTLAAGLGPIGYAAAIAHLVTHGFFKAGLFLGAGSVMHAMNDEVDMRRYGGLRTVMPVTFATFGVGYLAIIGVPFLSGWWTKEGIIQAAFDSGGLTGQILGWVTVLGAGLTAFYMSRIMFLTFFGTKRWAKDANPHESPAVMTVPMIILAIGSAALGAVLVVNYTLANFLAPVVGAPAHEFDLVHMSTSPYSLAALVLMIVGVAYAWVRYANDKVPVTAPKGNFITVAAREELYGNAINEGLFMRPGQQLTRATVAFDDHGVDGVVTGIARSVRAASENLRLTQTGFARSYALTMLFGAAVVVVTTLGVNLA GT:EXON 1|1-648:0| BL:SWS:NREP 1 BL:SWS:REP 43->631|NUOL_STRCO|e-142|51.2|586/654| PROS 412->426|PS00024|HEMOPEXIN|PDOC00023| TM:NTM 13 TM:REGION 19->40| TM:REGION 51->73| TM:REGION 101->123| TM:REGION 147->169| TM:REGION 196->218| TM:REGION 225->247| TM:REGION 266->288| TM:REGION 297->319| TM:REGION 390->412| TM:REGION 433->455| TM:REGION 482->504| TM:REGION 525->547| TM:REGION 625->647| SEG 2->19|tstlaaggyaattaadgg| SEG 29->42|alpllgaavlllgg| SEG 95->106|didlsllidpls| SEG 141->154|lnlfvaamlvlvla| SEG 181->191|kpaaavaakka| SEG 237->243|glllllg| SEG 302->318|tivgaatllagaiigca| SEG 359->370|gffkaglflgag| SEG 483->498|iilaigsaalgavlvv| SEG 632->645|lfgaavvvvttlgv| RP:PDB:NREP 1 RP:PDB:REP 246->473|2c1wA|5e-22|7.9|214/273| RP:PFM:NREP 3 RP:PFM:REP 85->140|PF00662|2e-07|39.3|56/61|Oxidored_q1_N| RP:PFM:REP 155->424|PF00361|3e-44|40.2|266/268|Oxidored_q1| RP:PFM:REP 522->622|PF03746|5e-05|35.6|101/241|LamB_YcsF| HM:PFM:NREP 3 HM:PFM:REP 154->424|PF00361|2.8e-81|39.2|268/270|Oxidored_q1| HM:PFM:REP 83->143|PF00662|1.8e-24|45.9|61/62|Oxidored_q1_N| HM:PFM:REP 450->501|PF06455|3e-06|25.0|52/181|NADH5_C| GO:PFM:NREP 6 GO:PFM GO:0008137|"GO:NADH dehydrogenase (ubiquinone) activity"|PF00662|IPR001516| GO:PFM GO:0042773|"GO:ATP synthesis coupled electron transport"|PF00662|IPR001516| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00662|IPR001516| GO:PFM GO:0008137|"GO:NADH dehydrogenase (ubiquinone) activity"|PF00361|IPR001750| GO:PFM GO:0042773|"GO:ATP synthesis coupled electron transport"|PF00361|IPR001750| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00361|IPR001750| RP:SCP:NREP 2 RP:SCP:REP 174->292|1qd1A2|2e-13|14.2|106/140|d.58.34.1| RP:SCP:REP 321->396|1jtkA|2e-07|6.8|74/131|c.97.1.1| OP:NHOMO 1527 OP:NHOMOORG 781 OP:PATTERN 22-1-111-------14111111141143434-----------2111114433-51362722122-22 2452331333311132111-13--231111123343333322231223322-121222--45112322333--------21143312111111---1--1-111-23331--------------1322424322344444422222433333333332222223333334212111112111111211--2-2133333233133332332221133232223111112112113333333333333323333----------------------------------------------------------------------12--1----------1-------111--3--122211---123--31---343111222222112445335655422222222222-22222132214123343453225522233233444433211111111322-11362223122222221111111112111131121211-22222111111211112211111111111222111221113112322222233213111111111234212211-213-223223-242254629333317-2121111111111111111111121233111-3-12-11------33-----133-441--532211111111221112221211111-2222211221213122222111211121111111111111111111122221-211111111111111422221222241121----2----------222222211131222222214222232221111111113----22212-----33323223332323111-111111------------------------------------1211-1-11-151 ---------------------------111-11111-----------1------121-----3-1-------1-----------1--------1---12------1------11112-----1-11-1-12--11-----1--11--------1-1------11-112-----5-1----------1-8--2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 214 STR:RPRED 33.0 SQ:SECSTR #####################################################################################################################################################################################################################################################TTTEEEcc##ccccccccccccEEEEcHHHHTTTcTHHHHH##HHHHHHHHcccccccccHHHHHHH######HHHHHHHTTcHHHHHHHHHHHHTTcccHHHHHHHHHHHHHccccccccccccHHHHHTTcccccccccccccHHHHHHHHTcEEEEEEccccccccccTTccEEEEEE####EETTcccccEEEEccccHHHHHHHHHHHHHTccccEEEEEEEE############################################################################################################################################################################### DISOP:02AL 1-2| PSIPRED ccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEHEEccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHccHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //