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Thermobifida fusca YX (tfus0)
Gene : AAZ56726.1
DDBJ      :             NADH (or F420H2) dehydrogenase, subunit C
Swiss-Prot:             

Homologs  Archaea  32/68 : Bacteria  571/915 : Eukaryota  149/199 : Viruses  0/175   --->[See Alignment]
d.307.1
:252 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   136->250 3i9v5 PDBj 1e-18 35.7 %
:RPS:PDB   48->249 2ci5A PDBj 5e-20 9.6 %
:RPS:SCOP  82->249 2fug51  d.307.1.1 * 8e-37 31.2 %
:HMM:SCOP  84->251 2fug51 d.307.1.1 * 1.7e-45 40.6 %
:RPS:PFM   120->226 PF00329 * Complex1_30kDa 4e-22 50.0 %
:HMM:PFM   120->226 PF00329 * Complex1_30kDa 3e-35 43.1 102/103  
:BLT:SWISS 13->252 NUOC_STRCO 3e-87 67.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56726.1 GT:GENE AAZ56726.1 GT:PRODUCT NADH (or F420H2) dehydrogenase, subunit C GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(3169717..3170475) GB:FROM 3169717 GB:TO 3170475 GB:DIRECTION - GB:PRODUCT NADH (or F420H2) dehydrogenase, subunit C GB:PROTEIN_ID AAZ56726.1 GB:DB_XREF GI:71916824 InterPro:IPR001268 InterPro:IPR010218 LENGTH 252 SQ:AASEQ MTSNGQQGKPNLPEKDNLPRELGTQRINSPIARMGMFGAKTTGDTSGYGRLRVYRHVPAAAQRPYSDPSDPRTAYFDEVADALERSLKEIGTPYDTAISRVVVDRGEITFHVQREHLLDVATRLRDDPALRFELCLGVTGVHYPEDEGNELHAVYALRSITHNYEIRLEVSCPDSDPHIPSIVSVYPTNDWHEREAWDFFGIIFDGHPALTRIHMPDDWHGHPQRKDYPLGGIPVEYRGAKVPPPDQRRSYA GT:EXON 1|1-252:0| BL:SWS:NREP 1 BL:SWS:REP 13->252|NUOC_STRCO|3e-87|67.7|232/251| BL:PDB:NREP 1 BL:PDB:REP 136->250|3i9v5|1e-18|35.7|115/196| RP:PDB:NREP 1 RP:PDB:REP 48->249|2ci5A|5e-20|9.6|178/272| RP:PFM:NREP 1 RP:PFM:REP 120->226|PF00329|4e-22|50.0|102/103|Complex1_30kDa| HM:PFM:NREP 1 HM:PFM:REP 120->226|PF00329|3e-35|43.1|102/103|Complex1_30kDa| GO:PFM:NREP 2 GO:PFM GO:0008137|"GO:NADH dehydrogenase (ubiquinone) activity"|PF00329|IPR001268| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00329|IPR001268| RP:SCP:NREP 1 RP:SCP:REP 82->249|2fug51|8e-37|31.2|157/191|d.307.1.1| HM:SCP:REP 84->251|2fug51|1.7e-45|40.6|165/0|d.307.1.1|1/1|Nqo5-like| OP:NHOMO 840 OP:NHOMOORG 752 OP:PATTERN ----1--111111111--------21121211-----------------1111----11211111-11 22212---------11111-11--11111111111111111111-1--1-----------21112112221-----------12222211111---1--1-11--22211--------------1111111111212222211121111111111111111111112111111111111111111111----1-111111111111111------111111----------1-----------------------------------------------------------------------------------------------1-----------------------2--1-1111----11-------22-111111111111111112222211111111111-11111111111111112221212211111111111111111111111222-1112112111111111-1111-1--1111111111111-11111111111111111111111111111111111111111111-111111111111111111111121111---1---12-----222122213222212-11111111111111111111111-1111111---------------------1----11--211111111111111111111111111-1111111111111111111111111111111111111111111111111111-11111111111111111111111111--1----------------11111111111-1111111111111-1111111111111--------------11111111111111111-111111----------------------------------------------121 ------1-----21111111111111111111111111111111111111111111111111111----1--111------11111---12111111111111111-12-23211111111-1-11121141-2211111111111111111-1112111221211111--2211111--------1131-3------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 198 STR:RPRED 78.6 SQ:SECSTR ###############################################ccccc####ccEEEEEcccTc#EcccTTHHHHcccccccHHHHHHHHHHHHHHHHTTcccEEEEEcccTTcTTTTcGGGHGEEEETTEEEEcccccGGGTTHHHHHHHHHHHHHHHTTcEEEEcccTTccHHHHccccGGGEEEccccEEEEEcccHHHHHHHHHHcTTccEEEEEccccccGGGcEEETTEEEEcccHHHHc## DISOP:02AL 1-15, 45-66| PSIPRED cccccccccccccHHHHccccccccccccHHHHHEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHEEEEEEEccEEEEEEcHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccEEEEEEEEEEccccEEEEEEEEcccccccccHHHHHccccHHHHHHHHHHcEEEccccccccccccccccccccccccccccccHHccccccccHHHEEEcc //