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Thermobifida fusca YX (tfus0)
Gene : AAZ56744.1
DDBJ      :             DNA repair protein RadA
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  837/915 : Eukaryota  21/199 : Viruses  0/175   --->[See Alignment]
c.37.1d.14.1g.41.5
:454 amino acids
:PSIPRED
:DISOPRED
:BLT:PDB   363->449 1xhkB PDBj 2e-07 25.3 %
:RPS:PDB   1->33 2crcA PDBj 1e-05 12.5 %
:RPS:PDB   70->294 3dvlD PDBj 2e-29 19.2 %
:RPS:SCOP  1->33 1b71A2  g.41.5.1 * 1e-05 18.8 %
:RPS:SCOP  63->275 1tf7A1  c.37.1.11 * 5e-23 22.2 %
:RPS:SCOP  284->449 1xhkA  d.14.1.10 * 2e-25 20.5 %
:HMM:SCOP  28->268 1g19A1 c.37.1.11 * 5.4e-50 35.1 %
:HMM:SCOP  249->451 1xhkA_ d.14.1.10 * 1.6e-35 34.7 %
:RPS:PFM   70->251 PF06745 * KaiC 3e-30 52.6 %
:RPS:PFM   362->445 PF05362 * Lon_C 2e-05 29.8 %
:HMM:PFM   69->138 PF06745 * KaiC 1.1e-11 40.0 70/226  
:HMM:PFM   157->269 PF06745 * KaiC 1e-05 24.5 106/226  
:HMM:PFM   362->445 PF05362 * Lon_C 3.5e-05 29.8 84/205  
:BLT:SWISS 6->449 RADA_STRP8 e-109 47.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56744.1 GT:GENE AAZ56744.1 GT:PRODUCT DNA repair protein RadA GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 3185153..3186517 GB:FROM 3185153 GB:TO 3186517 GB:DIRECTION + GB:PRODUCT DNA repair protein RadA GB:PROTEIN_ID AAZ56744.1 GB:DB_XREF GI:71916842 InterPro:IPR001553 InterPro:IPR001984 InterPro:IPR003593 InterPro:IPR004504 LENGTH 454 SQ:AASEQ MARAAKRTFRCTECGWTAPKWVGRCGGCQAWGTVEEAAGSAASGVAPIRAGTPARPIAEIDVEAAQATPTGLAELDRVLGGGMVPGGVLLLAGEPGVGKSTLLLEVAARYAALGPVLYVTGEESAGQVRLRAERVGALAPKLYLAAETELPAVAGHVDEVMPRLLIVDSVQTMSVPEAPGTPGGVTQVREVAAGLIRLAKERDIATVLVGHVTKDGSIAGPRVLEHLVDVVLQFEGDRHSQLRILRAVKNRYGPTDEIGCFELTDSGIVGLPDPSGLFLTRRTEPVPGTCVTVTVEGRRPLIAEVQALVAPTALPQPRRATSGLDAARVAMVLAVLEKRVNLRMGAADVYTSTVGGVRLVEPSVDLALALALAGSHTDMALPPGMVAIGEVGLAGDVRVVSSLPRRLQEARRLGFTTAIVPAGADDAVHEEGLTVVEVTDLGQALRTAFPELRR GT:EXON 1|1-454:0| BL:SWS:NREP 1 BL:SWS:REP 6->449|RADA_STRP8|e-109|47.3|444/453| SEG 34->46|veeaagsaasgva| SEG 78->93|vlgggmvpggvlllag| BL:PDB:NREP 1 BL:PDB:REP 363->449|1xhkB|2e-07|25.3|87/185| RP:PDB:NREP 2 RP:PDB:REP 1->33|2crcA|1e-05|12.5|32/52| RP:PDB:REP 70->294|3dvlD|2e-29|19.2|213/483| RP:PFM:NREP 2 RP:PFM:REP 70->251|PF06745|3e-30|52.6|175/202|KaiC| RP:PFM:REP 362->445|PF05362|2e-05|29.8|84/186|Lon_C| HM:PFM:NREP 3 HM:PFM:REP 69->138|PF06745|1.1e-11|40.0|70/226|KaiC| HM:PFM:REP 157->269|PF06745|1e-05|24.5|106/226|KaiC| HM:PFM:REP 362->445|PF05362|3.5e-05|29.8|84/205|Lon_C| GO:PFM:NREP 3 GO:PFM GO:0004176|"GO:ATP-dependent peptidase activity"|PF05362|IPR008269| GO:PFM GO:0004252|"GO:serine-type endopeptidase activity"|PF05362|IPR008269| GO:PFM GO:0006508|"GO:proteolysis"|PF05362|IPR008269| RP:SCP:NREP 3 RP:SCP:REP 1->33|1b71A2|1e-05|18.8|32/44|g.41.5.1| RP:SCP:REP 63->275|1tf7A1|5e-23|22.2|207/242|c.37.1.11| RP:SCP:REP 284->449|1xhkA|2e-25|20.5|166/185|d.14.1.10| HM:SCP:REP 28->268|1g19A1|5.4e-50|35.1|239/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 249->451|1xhkA_|1.6e-35|34.7|170/0|d.14.1.10|1/1|Ribosomal protein S5 domain 2-like| OP:NHOMO 875 OP:NHOMOORG 858 OP:PATTERN -------------------------------------------------------------------- ----11111111-111111-11--1111111-11111111111111-11111111111--111111111111111111----111111111111111--11111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111-11111--1111111111111111-11-111111111111111111111111111111111111111121111111111211111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--11111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111--11111111-----1-111--------------------------1111111111--- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------1-1-7111111122-16112111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-3, 36-62, 176-190, 280-284, 452-454| PSIPRED ccccccEEEEEcccccccccccEEcccccccccHHEEcccccccccccccccccEEEccccHHHccccccccHHHHHHHcccccccEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHHHHccccHHHHEEEcHHHHHHHHHHHHHccccEEEEccHHHcccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccccccccEEEEEEEEEEEEEEcccccEEEEEEEEccccccccEEEEEEEccccEEEcccHHHHHHcccccccEEEEEEEEEccccEEEEEEEEEcccccccccEEEEEcHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccccHHHHHHHHHHHHcccccccEEEEEEEEccccEEEcccHHHHHHHHHHccccEEEEccccccccccccEEEEEEccHHHHHHHHHHcccc //