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Thermobifida fusca YX (tfus0)
Gene : AAZ56788.1
DDBJ      :             putative TetR-family transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  183/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.121.1a.4.1
:200 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   17->198 3dcfB PDBj 1e-16 30.3 %
:RPS:PDB   16->199 3dcfA PDBj 5e-24 27.7 %
:RPS:SCOP  16->85 1z77A1  a.4.1.9 * 1e-17 30.0 %
:RPS:SCOP  85->199 2genA2  a.121.1.1 * 4e-11 14.8 %
:HMM:SCOP  2->90 1t33A1 a.4.1.9 * 4.7e-19 35.2 %
:HMM:SCOP  85->200 1vi0A2 a.121.1.1 * 2.8e-22 26.7 %
:RPS:PFM   18->64 PF00440 * TetR_N 3e-09 48.9 %
:RPS:PFM   112->198 PF08360 * TetR_C_5 4e-07 33.7 %
:HMM:PFM   18->64 PF00440 * TetR_N 3.2e-21 44.7 47/47  
:HMM:PFM   121->194 PF08359 * TetR_C_4 1.2e-06 20.3 74/133  
:BLT:SWISS 17->194 YDGC_BACSU 8e-11 29.4 %
:PROS 30->61|PS01081|HTH_TETR_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56788.1 GT:GENE AAZ56788.1 GT:PRODUCT putative TetR-family transcriptional regulator GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(3233939..3234541) GB:FROM 3233939 GB:TO 3234541 GB:DIRECTION - GB:PRODUCT putative TetR-family transcriptional regulator GB:PROTEIN_ID AAZ56788.1 GB:DB_XREF GI:71916886 InterPro:IPR001647 LENGTH 200 SQ:AASEQ MTQSAESTTVSPSVPDRLLAEATRLFAQRGFDRVSVQELVEAAGVTKGAMYHYFTSKDDLLFAIYQRVLQLQMSRLAQIVERGGDVTERLHAAAADVVKTTVDNLDDMVIFFRSLHMLSPDRQREVRKERRAYHELFRSLVEEGMREGVFQDKIPADIVVNYFFGSIHHLSMWYRADGELDGAQLGEYYADLLLASLRAD GT:EXON 1|1-200:0| BL:SWS:NREP 1 BL:SWS:REP 17->194|YDGC_BACSU|8e-11|29.4|170/195| PROS 30->61|PS01081|HTH_TETR_1|PDOC00830| SEG 92->95|aaaa| BL:PDB:NREP 1 BL:PDB:REP 17->198|3dcfB|1e-16|30.3|175/181| RP:PDB:NREP 1 RP:PDB:REP 16->199|3dcfA|5e-24|27.7|177/183| RP:PFM:NREP 2 RP:PFM:REP 18->64|PF00440|3e-09|48.9|47/47|TetR_N| RP:PFM:REP 112->198|PF08360|4e-07|33.7|83/130|TetR_C_5| HM:PFM:NREP 2 HM:PFM:REP 18->64|PF00440|3.2e-21|44.7|47/47|TetR_N| HM:PFM:REP 121->194|PF08359|1.2e-06|20.3|74/133|TetR_C_4| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00440|IPR001647| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00440|IPR001647| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08360|IPR013571| GO:PFM GO:0016481|"GO:negative regulation of transcription"|PF08360|IPR013571| RP:SCP:NREP 2 RP:SCP:REP 16->85|1z77A1|1e-17|30.0|70/75|a.4.1.9| RP:SCP:REP 85->199|2genA2|4e-11|14.8|115/118|a.121.1.1| HM:SCP:REP 2->90|1t33A1|4.7e-19|35.2|88/0|a.4.1.9|1/1|Homeodomain-like| HM:SCP:REP 85->200|1vi0A2|2.8e-22|26.7|116/0|a.121.1.1|1/1|Tetracyclin repressor-like, C-terminal domain| OP:NHOMO 370 OP:NHOMOORG 193 OP:PATTERN --------------------------------------2-1-1-------211-1----1-------- 111-1--1--1---53322-24--34222223333376C8-4-2---------11-------3-1343252-----------2-------------------------1---------------------------1--11---3--------------------------------------22211---12-11111122122221212--1122235532-1-1111-3------------------------------------------------------1--------------------------1----------11-------------------------2--1-111--------------1--2--1--------1----11221-----------------2---21----------1--14---211--11-23---------------1-------------------------------12--18463-------------111111-11-21211--111-2---4-421--------11----------12--612-----------1---111------1--3-------------------------------3------------------------------------------------------------------------------11-------------------------------------------------------21-----------------111111------2323-2-111-1------------------------------1------------------------------------------------------------1--------1- --------------------------------------------------------------------------------------------------------------------------------------------------------------1-----------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 200 STR:RPRED 100.0 SQ:SECSTR cccccHHHHHcHHHHHHHHHHHHHHHHHTcTTTccHHHHHHHHTccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHTccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccccccHHHHHHHHHHHHHTHHHHccTTccccHHHHHHHHHHHHHHccccH DISOP:02AL 1-17| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHcccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccc //