[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermobifida fusca YX (tfus0)
Gene : AAZ56811.1
DDBJ      :             helix-turn-helix motif
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  13/915 : Eukaryota  0/199 : Viruses  1/175   --->[See Alignment]
a.35.1
:401 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->48 2b5aC PDBj 1e-04 35.6 %
:RPS:PDB   9->48 2awiG PDBj 8e-09 23.7 %
:RPS:SCOP  3->49 1y7yA1  a.35.1.3 * 1e-07 31.9 %
:HMM:SCOP  1->73 1y9qA1 a.35.1.8 * 4.8e-12 34.7 %
:HMM:PFM   13->68 PF01381 * HTH_3 6.1e-09 32.7 55/55  
:HMM:PFM   336->365 PF07719 * TPR_2 0.00093 16.7 30/34  
:HMM:PFM   86->157 PF05536 * Neurochondrin 0.0003 23.6 72/543  
:BLT:SWISS 104->307 MUKB_PECCP 8e-05 29.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56811.1 GT:GENE AAZ56811.1 GT:PRODUCT helix-turn-helix motif GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 3257242..3258447 GB:FROM 3257242 GB:TO 3258447 GB:DIRECTION + GB:PRODUCT helix-turn-helix motif GB:PROTEIN_ID AAZ56811.1 GB:DB_XREF GI:71916909 InterPro:IPR001387 InterPro:IPR001440 InterPro:IPR002197 LENGTH 401 SQ:AASEQ MSTEYQKALGRKIAQYRRRRGLSQREFAALINRSEAWVSQVERGVRKVDRMSVLAAVAEVLDVPVAELAAEAPIVAATAKETPDSTRLRLVLSAAHALNALLAQKQPADLAELRPRVEQAWQLTHKGHYLELTDLLESLVPQLETAARSVDDEQRTECFRLLASVYQACSSALSKLGDFAAAWVAAERAIVAAERADDPLLMAAGEFRLCVTFQGAKHFHQVDTVARTSIEALSSLASNDRPEVLSLMGALTLQRAIAAARSNDATAAYTHLISARSLAQQLGADRNDFHTEFGPTNVSLHEVSVAVDLGDAGIALRAAATVDASDLSAERRGRFLIDVARAHLQRRNLDKAIHTLHQAESITPEQVHSHPLARQAIGDLLTIQDPASPALQELARRAGML GT:EXON 1|1-401:0| BL:SWS:NREP 1 BL:SWS:REP 104->307|MUKB_PECCP|8e-05|29.0|193/1479| SEG 53->79|vlaavaevldvpvaelaaeapivaata| SEG 90->103|lvlsaahalnalla| SEG 180->196|aaawvaaeraivaaera| BL:PDB:NREP 1 BL:PDB:REP 4->48|2b5aC|1e-04|35.6|45/76| RP:PDB:NREP 1 RP:PDB:REP 9->48|2awiG|8e-09|23.7|38/292| HM:PFM:NREP 3 HM:PFM:REP 13->68|PF01381|6.1e-09|32.7|55/55|HTH_3| HM:PFM:REP 336->365|PF07719|0.00093|16.7|30/34|TPR_2| HM:PFM:REP 86->157|PF05536|0.0003|23.6|72/543|Neurochondrin| RP:SCP:NREP 1 RP:SCP:REP 3->49|1y7yA1|1e-07|31.9|47/69|a.35.1.3| HM:SCP:REP 1->73|1y9qA1|4.8e-12|34.7|72/0|a.35.1.8|1/1|lambda repressor-like DNA-binding domains| OP:NHOMO 32 OP:NHOMOORG 14 OP:PATTERN -------------------------------------------------------------------- ----3-------------------1-----------3----232----------------54--2121--2---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------- STR:NPRED 52 STR:RPRED 13.0 SQ:SECSTR cccHHHHHcHHHHHHHHHHTTccHHHHHTTTcHHHHHHHHHHTTcccccHHH############################################################################################################################################################################################################################################################################################################################################################# DISOP:02AL 1-4| PSIPRED ccHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHccccccccHHHHHHHHHHHcccHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHccccccHHHHHHHHHcccc //