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Thermobifida fusca YX (tfus0)
Gene : AAZ56815.1
DDBJ      :             DNA polymerase III delta prime subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  840/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.80.1c.37.1
:390 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   38->179 1xxhB PDBj 3e-15 32.6 %
:RPS:PDB   68->180 3c58A PDBj 4e-20 11.5 %
:RPS:SCOP  36->183 1jr3A2  c.37.1.20 * 5e-27 32.0 %
:RPS:SCOP  294->383 1a5tA1  a.80.1.1 * 7e-09 8.4 %
:HMM:SCOP  4->214 1a5tA2 c.37.1.20 * 4.2e-51 31.8 %
:HMM:PFM   41->167 PF00004 * AAA 3.2e-06 23.8 101/130  
:HMM:PFM   176->208 PF00627 * UBA 0.00012 37.5 32/37  
:HMM:PFM   4->62 PF05496 * RuvB_N 0.00025 30.2 53/234  
:BLT:SWISS 68->190 HOLB_HAEIN 3e-18 36.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56815.1 GT:GENE AAZ56815.1 GT:PRODUCT DNA polymerase III delta prime subunit GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(3263171..3264343) GB:FROM 3263171 GB:TO 3264343 GB:DIRECTION - GB:PRODUCT DNA polymerase III delta prime subunit GB:PROTEIN_ID AAZ56815.1 GB:DB_XREF GI:71916913 InterPro:IPR000862 InterPro:IPR001270 InterPro:IPR004622 LENGTH 390 SQ:AASEQ MSVFDTLVGQDTVVQRLRAAVRAADNLLSGGDGTGMTHAWLFTGPPGAGRAQAARAFAAALQCTHGGCGECASCHQVLAGTHPDVLYVRPSGLSFGVEQTRELVVRAASSPTGGRFRVVLFEDADRATEAASNALLKAIEEPAPRTVWLLCTPTAHDLLVTIRSRCRLVNLRTPSTEAIIDALVTRDGIDRDRAVAAARAAAGHLERARQLATDETARARREEVLTIPARLDSLGACVHAAARLYEIAEADAKESTAALDEQEKADLKAAFGEGATGKGVAKAVRGAAGALKELEERQKRRATRIKRDAYDTFLMDLVAFYRDVLAIQLGASVELSTADRDADLRRVARSSTPEATLRRIDAIMECRRRINANVHPQIAMEAMTAALYLG GT:EXON 1|1-390:0| BL:SWS:NREP 1 BL:SWS:REP 68->190|HOLB_HAEIN|3e-18|36.6|123/327| SEG 13->24|vvqrlraavraa| SEG 47->60|gagraqaarafaaa| SEG 191->209|rdravaaaraaaghlerar| SEG 272->290|gegatgkgvakavrgaaga| SEG 338->349|adrdadlrrvar| BL:PDB:NREP 1 BL:PDB:REP 38->179|1xxhB|3e-15|32.6|141/364| RP:PDB:NREP 1 RP:PDB:REP 68->180|3c58A|4e-20|11.5|113/269| HM:PFM:NREP 3 HM:PFM:REP 41->167|PF00004|3.2e-06|23.8|101/130|AAA| HM:PFM:REP 176->208|PF00627|0.00012|37.5|32/37|UBA| HM:PFM:REP 4->62|PF05496|0.00025|30.2|53/234|RuvB_N| RP:SCP:NREP 2 RP:SCP:REP 36->183|1jr3A2|5e-27|32.0|147/240|c.37.1.20| RP:SCP:REP 294->383|1a5tA1|7e-09|8.4|83/117|a.80.1.1| HM:SCP:REP 4->214|1a5tA2|4.2e-51|31.8|201/0|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1323 OP:NHOMOORG 844 OP:PATTERN -------------------------------------------------------------------- 2221222222222222222-222222222222222222222222222222222222222222222222222222222222222212221111-1111--111---11121111111111111112111-11111-12212222222124-11121111111111-112311112111111111212112222222222222222222422222222222224221222222222222222222222222222222212212222222222222---11122221112222222222222222222122112222112221111122111111111-1-2-1111112-2--2222222222122222222111111-1111--1-211---12----122222222222-11-11---1---1--111-111----12-111-1--21122222222122221121111111111111111111111112---1121112111111111111111122111111111112222112222122222222111212122122222221111122222222212222112222222222212222211-111111111111-1111111-1112222222221122222212222222222222-2222212-1111-222121111111111-1111111111111111111111212212122222222222222111111112-2222222222221122111112222222222222222222222221111112111222222222212222122211111111122222222222222222222222221111112111111111111111111-1--1--11-1-----1---211111111111111111 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1----2-----------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 146 STR:RPRED 37.4 SQ:SECSTR #####################################cEEEEEccTTccHHHHHHHHHHHHTccTccHHHHHHHHHHHTTccccEEEEcGGGcTTcHHHHHHHHTTccEEEEEEETTEEEEEETTTEEEcTTTcEEEEEcTTccEEEEEccccEEEEEcTTcccEEEEEEGGGHHHHHHHTTc############################################################################################################################################################################################################### PSIPRED cccHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHccccccccHHHHHHHHHccccccEEEEccccccccHHHHHHHHHHHHHHHHHcccEEEEEccHHHccHHHHHHHHHHHHcccccEEEEEEEccHHHccHHHHHccEEEEcccccHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcc //