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Thermobifida fusca YX (tfus0)
Gene : AAZ56824.1
DDBJ      :             xylanase. Glycosyl Hydrolase family 10.
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  85/915 : Eukaryota  57/199 : Viruses  0/175   --->[See Alignment]
c.1.8
:399 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   80->374 1vbrA PDBj 9e-75 45.5 %
:RPS:PDB   49->369 2depA PDBj 2e-33 28.8 %
:RPS:SCOP  55->372 1b30A  c.1.8.3 * 2e-86 34.5 %
:HMM:SCOP  38->381 1us3A2 c.1.8.3 * 1.2e-103 42.8 %
:RPS:PFM   79->368 PF00331 * Glyco_hydro_10 3e-71 48.0 %
:HMM:PFM   75->370 PF00331 * Glyco_hydro_10 8.4e-94 40.1 289/320  
:BLT:SWISS 80->374 XYNB_THENE 3e-72 45.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56824.1 GT:GENE AAZ56824.1 GT:PRODUCT xylanase. Glycosyl Hydrolase family 10. GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION 3276895..3278094 GB:FROM 3276895 GB:TO 3278094 GB:DIRECTION + GB:PRODUCT xylanase. Glycosyl Hydrolase family 10. GB:PROTEIN_ID AAZ56824.1 GB:DB_XREF GI:71916922 InterPro:IPR001000 LENGTH 399 SQ:AASEQ MKPVRLITAALTTAVLSLPLMVVPASAGPVHDHHPAPHSNAKSERLRWAAPDGFYIGSAVAGGGHHLEQDYPDPFTHDGKYRSILAQQFSSVSPENQMKWEYIHPEPDRYDFAMADKIVDFAERNDQKVRGHTLLWHSQNPEWLEEGDYSPEELREILRDHITTVVGRYAGRIHQWDVANEIFDEQGNLRTQENIWIRELGPGIIADAFRWAHEADPNAELFFNDYNVEGINPKSDAYYELIQELLDDGVPVHGFSVQGHLSTRYGFPGDLEQNLRRFDELGLATAITELDVRMDLPASGKPTPKQLEQQADYYQQALEACLAVEGCDSFTIWGFTDKYSWVPVFFPDEGAATIMTEKYERKPAFFALQQTLREARCADSPKPGPGKPKPGKGPKHDHC GT:EXON 1|1-399:0| BL:SWS:NREP 1 BL:SWS:REP 80->374|XYNB_THENE|3e-72|45.9|290/346| SEG 381->395|pkpgpgkpkpgkgpk| BL:PDB:NREP 1 BL:PDB:REP 80->374|1vbrA|9e-75|45.5|290/324| RP:PDB:NREP 1 RP:PDB:REP 49->369|2depA|2e-33|28.8|309/340| RP:PFM:NREP 1 RP:PFM:REP 79->368|PF00331|3e-71|48.0|275/294|Glyco_hydro_10| HM:PFM:NREP 1 HM:PFM:REP 75->370|PF00331|8.4e-94|40.1|289/320|Glyco_hydro_10| GO:PFM:NREP 2 GO:PFM GO:0004553|"GO:hydrolase activity, hydrolyzing O-glycosyl compounds"|PF00331|IPR001000| GO:PFM GO:0005975|"GO:carbohydrate metabolic process"|PF00331|IPR001000| RP:SCP:NREP 1 RP:SCP:REP 55->372|1b30A|2e-86|34.5|284/302|c.1.8.3| HM:SCP:REP 38->381|1us3A2|1.2e-103|42.8|339/0|c.1.8.3|1/1|(Trans)glycosidases| OP:NHOMO 427 OP:NHOMOORG 143 OP:PATTERN -----------------------------5-------------------------------------- 1-3-4-----------------------------------2---312-431--1----------41-22-2--------------------1-------1-3---121------------------------------------1-1--1-----11--------1-112------------------12-1------------------1--1------2-----------5------------------------------------------------------------------------------------------5--2-----------4-------5-5--------------------6-----12223-----1-1----1-1----------------------1-----11-11-111----2-------------------------------------------------------------------------------------------------------1-----------------------------------------------------------4----------------------------------52-1-----------------------------------------------------------------------------------------------------------------------------------------------------------------4---------------11--------------------------32322111----------------------------------------------------1--31232-6- ------1--------127434424244-------------------2212543544673444------------1--------------632265------52-----2-A----------------------------------------------------LD--------1---2-------2B864C2116375- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 341 STR:RPRED 85.5 SQ:SECSTR #######################################cTTcccHHHHTTTTccEEEEEccHHcccTTcTTcGGGccHHHHHHHHHHccEEEEccTTcHHHHcccTTccccHHHHHHHHHHHHTTcEEEEEEEEEcccccGGGGcHHHHHHHHHHHHHHHHHHHHHHHTTTccEEEEEEccccTTcGGGccccHHHHHHTTHHHHHHHHHHHHHHccccEEEEEEccTTcHHHHHHHHHHHHHHHHTTccccEEEEccEEEcccccHHHHHHHHHHHHTTTcEEEEEEEEEEcccTTcccccHHHHHHHHHHHHHHHHHHTTGGGEEEEEEccccTTccGGGTccccccccccccTTccccHHHHHHHHHHHTcccccc################### DISOP:02AL 1-4, 378-399| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHccccEEEEEEccccccccccccccccccHHHHHHHHHHccccccccccccccccccccEEcHHHHHHHHHHHHHcccEEEccEEEEccccccccccccccHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEcccccccccccccHHHccHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccccccccccccccEEcccccccHHHHHHHHHHHcccccccccccccccccccccccccc //