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Thermobifida fusca YX (tfus0)
Gene : AAZ56940.1
DDBJ      :             transcriptional regulator, CarD family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  275/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.34.18c.79.1
:160 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   30->155 1dd5A PDBj 7e-04 23.6 %
:RPS:SCOP  4->56 2eyqA1  b.34.18.1 * 1e-07 25.0 %
:RPS:SCOP  82->155 1kl7A  c.79.1.1 * 7e-04 27.1 %
:HMM:SCOP  1->68 2eyqA1 b.34.18.1 * 5e-13 34.3 %
:RPS:PFM   3->56 PF02559 * CarD_TRCF 4e-09 50.0 %
:HMM:PFM   2->111 PF02559 * CarD_TRCF 4.8e-27 38.1 97/98  
:HMM:PFM   79->144 PF04954 * SIP 0.00078 19.7 66/119  
:BLT:SWISS 3->152 YDEB_BACSU 2e-20 29.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56940.1 GT:GENE AAZ56940.1 GT:PRODUCT transcriptional regulator, CarD family GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(3421963..3422445) GB:FROM 3421963 GB:TO 3422445 GB:DIRECTION - GB:PRODUCT transcriptional regulator, CarD family GB:PROTEIN_ID AAZ56940.1 GB:DB_XREF GI:71917038 LENGTH 160 SQ:AASEQ MTFKVGDTVVYPHHGAARIEAIETRTIKGEEKTYLVLKVDKGDLTVRVPADNAEEVGVRDVVGQEGLDRVFEVLRAPHTEEPTNWSRRYKANLEKLASGDVNKVAEVVRDLWRRDKERGLSAGEKRMLAKARQILVSELALAEKTNEDKAEALLDEVLAG GT:EXON 1|1-160:0| BL:SWS:NREP 1 BL:SWS:REP 3->152|YDEB_BACSU|2e-20|29.3|150/153| BL:PDB:NREP 1 BL:PDB:REP 30->155|1dd5A|7e-04|23.6|123/184| RP:PFM:NREP 1 RP:PFM:REP 3->56|PF02559|4e-09|50.0|54/100|CarD_TRCF| HM:PFM:NREP 2 HM:PFM:REP 2->111|PF02559|4.8e-27|38.1|97/98|CarD_TRCF| HM:PFM:REP 79->144|PF04954|0.00078|19.7|66/119|SIP| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF02559|IPR003711| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02559|IPR003711| RP:SCP:NREP 2 RP:SCP:REP 4->56|2eyqA1|1e-07|25.0|52/80|b.34.18.1| RP:SCP:REP 82->155|1kl7A|7e-04|27.1|70/509|c.79.1.1| HM:SCP:REP 1->68|2eyqA1|5e-13|34.3|67/0|b.34.18.1|1/1|CarD-like| OP:NHOMO 314 OP:NHOMOORG 275 OP:PATTERN -------------------------------------------------------------------- -111111111111111111-1111111111111111112211111121122111111111111111111111111111------------------------------------------------------------------------------------------------------------11-----122212223122223222--21223------1------1-------------------------------------------------------------------------------------------111-1-------2-211--------1111--1133121-1111---1------111111111111111111111111111111111-111111111111111111111111111111111111111111111111111-111----------111111111111111----111111-----------------------------------------------------------------------11111111111111--------1-22222111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11111111111111111--------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 123 STR:RPRED 76.9 SQ:SECSTR #############################cTTEEEEEEccTTHHHHHHHHHHHcccccccEEccccEEEEcc###cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc##### DISOP:02AL 160-161| PSIPRED cccccccEEEcccccEEEEEEEEEEEEccEEEEEEEEEEccccEEEEEEcccHHHcccEEcccHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcc //