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Thermobifida fusca YX (tfus0)
Gene : AAZ56962.1
DDBJ      :             similar to ABC-type proline/glycine betaine transport system permease component
Swiss-Prot:             

Homologs  Archaea  13/68 : Bacteria  414/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
f.58.1
:415 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   252->335 3dhwA PDBj 5e-06 31.0 %
:RPS:PDB   305->342 3dhwA PDBj 2e-12 31.6 %
:RPS:SCOP  256->404 2r6gG1  f.58.1.1 * 1e-10 15.4 %
:HMM:PFM   237->403 PF00528 * BPD_transp_1 2.7e-26 25.7 167/185  
:BLT:SWISS 165->405 PROW_ECOLI 1e-39 40.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAZ56962.1 GT:GENE AAZ56962.1 GT:PRODUCT similar to ABC-type proline/glycine betaine transport system permease component GT:DATABASE GIB00263CH01 GT:ORG tfus0 GB:ACCESSION GIB00263CH01 GB:LOCATION complement(3443167..3444414) GB:FROM 3443167 GB:TO 3444414 GB:DIRECTION - GB:PRODUCT similar to ABC-type proline/glycine betaine transport system permease component GB:PROTEIN_ID AAZ56962.1 GB:DB_XREF GI:71917060 LENGTH 415 SQ:AASEQ MSWLSPFPPRIPLGEGFEAFNTWLKDHFGGLFDVIGTVINWAVTTLRDFLTEPQAAQLTAIAAAILAVLLVRARPIPVLVIVGSTIALYVGQATFELGNTLVNHSPPQLFLWAMHLFGQEKVESNLVIGIVALIALVVVAAVYRIRLPLVAAVAGGWLAVILCGWLLFGAIPEVIGQPTAILMMLLLSTLAWVVAGWKLGVFSLVALTLVISIEQWSNAMSTLALVLVASLIAVVIAIPIGIVAAYSTVVSRIVKPVLDLMQTMPAFVYLIPAIFFFSLGAVPGVVATVVFAMPPGVRLTELGIRQIDKEVVEAGEAFGASPFKILTGIQLPLALSTIMAGVNQVIMLGLSMVVIAGMVGAGGLGNQVYQGISRNDGALGFEGGIAVVILAIFLDRLTAAITRRSPQARAERAAA GT:EXON 1|1-415:0| BL:SWS:NREP 1 BL:SWS:REP 165->405|PROW_ECOLI|1e-39|40.4|240/354| TM:NTM 8 TM:REGION 27->49| TM:REGION 63->85| TM:REGION 122->144| TM:REGION 170->192| TM:REGION 228->250| TM:REGION 269->291| TM:REGION 334->356| TM:REGION 381->402| SEG 54->74|qaaqltaiaaailavllvrar| SEG 126->142|lvigivalialvvvaav| SEG 147->162|lplvaavaggwlavil| SEG 223->245|lalvlvasliavviaipigivaa| SEG 352->365|mvviagmvgagglg| BL:PDB:NREP 1 BL:PDB:REP 252->335|3dhwA|5e-06|31.0|84/203| RP:PDB:NREP 1 RP:PDB:REP 305->342|3dhwA|2e-12|31.6|38/203| HM:PFM:NREP 1 HM:PFM:REP 237->403|PF00528|2.7e-26|25.7|167/185|BPD_transp_1| RP:SCP:NREP 1 RP:SCP:REP 256->404|2r6gG1|1e-10|15.4|149/284|f.58.1.1| OP:NHOMO 651 OP:NHOMOORG 427 OP:PATTERN -----------------------1--------------11111--11--1111-------1------- -----1-------------------1-------------------11-1--11-------22-1-222231---------1-2-----1111-2-------------11------------------------------11-------1--------1---1-----11-1-1-----1--------------21111121111212224-1114112---141133333321311222111111111133312-2-34--1-122--333-111-1113332212133-1111--11112222222222222211---1112-11-1-------1-111221---11---2----2211-113-121-1-1----1----------------1----22222222222-11-112-222115774445546441----11732223-4--------1---1--1-----------------------------2-----111111111131111-11121111-1211-1----1-2--1111---11-------1---------------12112111-2111--------------1------------------------------11----1---3-1111-11------1--11----11-------1111-111111111111-1111111111111111111111111111111111111111111211111111-111111111111--------1------331----11-----------------11--2222333323322-322-----------112-----22311--11111111--------------11111111------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 100 STR:RPRED 24.1 SQ:SECSTR ###########################################################################################################################################################################################################################################################HHHHHHHHHHHHccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccTTTTTHHHHHTccTHHHHHHTTHHHHHHHHHHHHHHHHHHHHH################################################################ DISOP:02AL 3-4, 407-415| PSIPRED ccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //