[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermotoga maritima MSB8 (tmar0)
Gene : AAD35478.1
DDBJ      :             transcriptional regulator, XylR-related
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  30/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.55.1
:371 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->245 1z05A PDBj 2e-06 26.1 %
:RPS:PDB   6->366 3bp8B PDBj 4e-18 14.6 %
:RPS:SCOP  11->74 2htjA1  a.4.5.73 * 2e-07 12.5 %
:RPS:SCOP  92->180 2aa4A1  c.55.1.10 * 8e-06 20.7 %
:RPS:SCOP  192->367 1sazA2  c.55.1.2 * 4e-16 11.6 %
:HMM:SCOP  5->72 1z6rA1 a.4.5.63 * 2.5e-11 36.8 %
:HMM:SCOP  75->369 1sz2A1 c.55.1.7 * 4.5e-17 24.4 %
:RPS:PFM   120->245 PF00480 * ROK 3e-05 31.7 %
:HMM:PFM   80->244 PF00480 * ROK 6.9e-16 29.0 162/179  
:HMM:PFM   10->55 PF01047 * MarR 2.9e-07 26.1 46/59  
:BLT:SWISS 6->260 XYLR2_BACSU 5e-12 26.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAD35478.1 GT:GENE AAD35478.1 GT:PRODUCT transcriptional regulator, XylR-related GT:DATABASE GIB00025CH01 GT:ORG tmar0 GB:ACCESSION GIB00025CH01 GB:LOCATION 412805..413920 GB:FROM 412805 GB:TO 413920 GB:DIRECTION + GB:PRODUCT transcriptional regulator, XylR-related GB:NOTE similar to GP:580652 percent identity: 52.26; identified by sequence similarity; putative GB:PROTEIN_ID AAD35478.1 GB:DB_XREF GI:4980897 LENGTH 371 SQ:AASEQ MPSPLLRRENKIKILRYILKNGKTTRNQLASNLNLAHSTLSYIIDELLDEGFLVFEEIKKKRGRPYQILSVNPEKFTAIGVKVGREEVRGVLFDARMNPLKEHRVQILSGMRNNDGYTRALRETIEQLRSENLLGVGICSSGIVKEGRVVVSHVMNVKDWDPRKVLKDLERILVMNDSDALCREISQRVNTDFLLVSYGVGIGASLWKDKKIHHIEMGHMLAASEGKCYCGQTGCLEYHSSEYAVLKSYLGKEIDFEDFITSEEEKYRQTIEELREKAREDFDSVKVHYEKAFKTFSVVLGNVIMGSGVSRVFFAGEGVVSEEMVKILEELVKVRFNRDFVGEVQFQVADANWMLGAARAVVDKYLPYIVK GT:EXON 1|1-371:0| BL:SWS:NREP 1 BL:SWS:REP 6->260|XYLR2_BACSU|5e-12|26.4|254/384| SEG 80->91|gvkvgreevrgv| BL:PDB:NREP 1 BL:PDB:REP 6->245|1z05A|2e-06|26.1|238/396| RP:PDB:NREP 1 RP:PDB:REP 6->366|3bp8B|4e-18|14.6|357/380| RP:PFM:NREP 1 RP:PFM:REP 120->245|PF00480|3e-05|31.7|126/181|ROK| HM:PFM:NREP 2 HM:PFM:REP 80->244|PF00480|6.9e-16|29.0|162/179|ROK| HM:PFM:REP 10->55|PF01047|2.9e-07|26.1|46/59|MarR| RP:SCP:NREP 3 RP:SCP:REP 11->74|2htjA1|2e-07|12.5|64/73|a.4.5.73| RP:SCP:REP 92->180|2aa4A1|8e-06|20.7|87/119|c.55.1.10| RP:SCP:REP 192->367|1sazA2|4e-16|11.6|172/203|c.55.1.2| HM:SCP:REP 5->72|1z6rA1|2.5e-11|36.8|68/0|a.4.5.63|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 75->369|1sz2A1|4.5e-17|24.4|271/0|c.55.1.7|1/1|Actin-like ATPase domain| OP:NHOMO 42 OP:NHOMOORG 30 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------1--------------------------------------1-----------------------------------------------------1-----------------11-------------------1--------------------1-----------------------------------------------------------------------------------12-----1--------2--------2--1321----------------1----------------------1---------1-----------------------1--1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------12-2122221--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 362 STR:RPRED 97.6 SQ:SECSTR ####cHHHHHHHHHHHHTTTcccccHHHHHHHTTccccTTTHHHHHHHTTTcEEEccccEEEcccccEEEEEEEccccEEEEEEcTTccEEEEcccccccccccccHHHHHHHHHHHHHHTTTTcccEEEEEEEccccccccccccccccccTTcccccHHHHHHHTTcccEEEEcHHHHHHHTcccTTcccEEEEEEcccEEEEEEETTEEccccGGGccccTTcccTTcccccHHHHccHHHHHHHHHHHHccccccTTccccHHHccHHHHHHHHTTTcHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcGGGGTTTcHHHHHHHHHHcccHHHHTTccEEEcccccTHHHHHHHHccHH##### DISOP:02AL 1-3, 54-67| PSIPRED cccHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccccccccccEEEEEcccccEEEEEEEEccEEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEEEEEcEEEEcccEEEEEccccccccHHHHHHHHccccEEEEcHHHHHHHHHccccEEEEEEEEEcccEEEEEccEEEccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccHHHHHHHHHHHHHHHHHHcc //