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Thermotoga maritima MSB8 (tmar0)
Gene : AAD35547.1
DDBJ      :             conserved hypothetical protein
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  903/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:311 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->300 2istA PDBj 4e-49 40.7 %
:RPS:PDB   10->300 3dh3B PDBj 7e-37 17.6 %
:RPS:SCOP  11->101 1dm9A  d.66.1.3 * 2e-13 18.0 %
:RPS:SCOP  82->302 1v9kA  d.265.1.3 * 2e-60 36.2 %
:HMM:SCOP  9->114 1dm9A_ d.66.1.3 * 2.8e-12 23.1 %
:HMM:SCOP  71->304 1przA_ d.265.1.3 * 1.3e-73 47.2 %
:RPS:PFM   89->243 PF00849 * PseudoU_synth_2 1e-27 48.3 %
:HMM:PFM   88->242 PF00849 * PseudoU_synth_2 1.4e-37 34.2 152/164  
:HMM:PFM   14->60 PF01479 * S4 1.1e-14 41.3 46/48  
:BLT:SWISS 14->306 Y1758_AQUAE 3e-80 54.0 %
:PROS 134->148|PS01129|PSI_RLU

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAD35547.1 GT:GENE AAD35547.1 GT:PRODUCT conserved hypothetical protein GT:DATABASE GIB00025CH01 GT:ORG tmar0 GB:ACCESSION GIB00025CH01 GB:LOCATION complement(491758..492693) GB:FROM 491758 GB:TO 492693 GB:DIRECTION - GB:PRODUCT conserved hypothetical protein GB:NOTE similar to GB:AE000657 percent identity: 68.81; identified by sequence similarity; putative GB:PROTEIN_ID AAD35547.1 GB:DB_XREF GI:4980971 LENGTH 311 SQ:AASEQ MKVWRVEKREEGWRLDQFLKEKTPSWISRSMIQKAIKEGKVKVNGQIKKPSYKLKEGEIVEVDLPEKPQEATVQPEEIELKVLYEDRDIIVIDKPGDMIVHPVPSKLSGTLVNALLHHCKDLQGVGGKLRPGIVHRLDKETSGVIVVAKNDFAHQSLSKQFKDRKVKKTYILLVKGKMKNDEGVIDLPLARHPVLRIKMAVVETGKEAITEYRVLKRFDDVATLVLAFPKTGRTHQIRVHMKSLGHPIMGDKIYGKPKEDEIFGIKRQMLHALKLGFFHPRTGEWMEFVSPLPEDFKEAIRRIHEYVRERS GT:EXON 1|1-311:0| BL:SWS:NREP 1 BL:SWS:REP 14->306|Y1758_AQUAE|3e-80|54.0|291/316| PROS 134->148|PS01129|PSI_RLU|PDOC00869| BL:PDB:NREP 1 BL:PDB:REP 6->300|2istA|4e-49|40.7|285/321| RP:PDB:NREP 1 RP:PDB:REP 10->300|3dh3B|7e-37|17.6|239/241| RP:PFM:NREP 1 RP:PFM:REP 89->243|PF00849|1e-27|48.3|147/149|PseudoU_synth_2| HM:PFM:NREP 2 HM:PFM:REP 88->242|PF00849|1.4e-37|34.2|152/164|PseudoU_synth_2| HM:PFM:REP 14->60|PF01479|1.1e-14|41.3|46/48|S4| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 11->101|1dm9A|2e-13|18.0|89/104|d.66.1.3| RP:SCP:REP 82->302|1v9kA|2e-60|36.2|213/227|d.265.1.3| HM:SCP:REP 9->114|1dm9A_|2.8e-12|23.1|104/104|d.66.1.3|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 71->304|1przA_|1.3e-73|47.2|229/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 3170 OP:NHOMOORG 1098 OP:PATTERN --------------------------------------11111------------------------- 2121132233331222223-41112222222222223333111111221111212212111112212222111111112111111222444414-311122223233424-2222222-211114111111111112222211131223233311223322313212222113111113111133311221433-3333333333333322333333333333223333334533333333333333333333-34344343334444444443333333333333333333333333333333333333333334333333332333333333333343333333334332332133141121212223132214333322222333333333333322222222223-3333333322322332222222223344333333333333333333333333342222222223311222222222222221222333332222222232222222222222222222222222322253525544442443322255344434422225491324372233221233434443477779724333333333333333333334333322666544747745999999A77799-A999A2-3233322222244443554444444444-44444444444444444445554444544444444444444445444444431544444444444222422222222233635555455454554445555455434446443444434-44433442222222226777566666667664544444333222222444433332223222252211112-22212222122222222222222222222232 11--442-3131223111111111111111111-1-1111111111111111111111111121222211332223322322222211-2321232111112131212H562432431322231331224C3-32322114234213112332333233-13333314224-1222346FA98136466165A982327 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 307 STR:RPRED 98.7 SQ:SECSTR TTccEEcHHcccEEHHHHHHTTTcTcccHHHHHHHHHTTcEEETTEEccTTcEEcccccEEEcEGGcccccTTETTEEEccccGGGccEEEEEEcTTcccccccccTTcHHHHHTcccccEEHHHTTccTEEEccccccccEEEEEEEccTHHHHHHHcGGGcHHccEEEEEEEcccccHHHHHHHHcccHHHHHHHHTcccccccccccEEEEcccEEHTHcEEEEEEccccTTHHHHHHHHTTccEEEEEEEEEEETTEEccETTEEcTTccTTcEEEccHHHHHHHHHTccccccccHHHEEEE#### DISOP:02AL 309-311| PSIPRED cEEEEEcccccccHHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEccccEEccccEEEEcccccccccccccEEEEEEEEEEccEEEEEEccccEEEEccccccccHHHHHHHHHHHHHHcccccccEEEEEEccccccEEEEEEccHHHHHHHHHHHHccccEEEEEEEEEEEEccccEEEEccccccccccEEEEEccccccccccEEEEEEccccEEEEEEEEcccccHHHHHHHHHcccEEEcccccccccccccccccHHEEEEEEEEEcccccccEEEEEccccHHHHHHHHHHHHHHcccc //