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Thermotoga maritima MSB8 (tmar0)
Gene : AAD35705.1
DDBJ      :             lipopolysaccharide biosynthesis protein
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  65/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:479 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   279->334 3bleA PDBj 2e-04 12.5 %
:RPS:PFM   8->275 PF01943 * Polysacc_synt 7e-12 26.9 %
:HMM:PFM   8->276 PF01943 * Polysacc_synt 4.1e-33 24.0 262/273  
:HMM:PFM   339->369 PF08545 * ACP_syn_III 0.00018 25.8 31/80  
:BLT:SWISS 9->347 Y507_PASMU 1e-08 19.1 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAD35705.1 GT:GENE AAD35705.1 GT:PRODUCT lipopolysaccharide biosynthesis protein GT:DATABASE GIB00025CH01 GT:ORG tmar0 GB:ACCESSION GIB00025CH01 GB:LOCATION complement(653395..654834) GB:FROM 653395 GB:TO 654834 GB:DIRECTION - GB:PRODUCT lipopolysaccharide biosynthesis protein GB:NOTE similar to GP:1276886 percent identity: 50.35; identified by sequence similarity; putative GB:PROTEIN_ID AAD35705.1 GB:DB_XREF GI:4981141 LENGTH 479 SQ:AASEQ MTPNERDLLKKYISFSLGTWFRALISFFTTPITTWMINPEEFGKATMFSTVYSILLLVALLGTPNSFLRFFPQKSEEEKPVLLWSSVMPPVLLSILLSLVVFIFRSSINTFLVGTPDSKAHVILIATLITGIFQTFNLNLVRSKGRAILFSAIQVIQSLSQMGFIVLYALLVSRDFYTLLYAQLFSNVVALAVGMLFERSYWFPVKIDKKLVFEVIKYGYPFVFSGLLLWLLNWIDRFVLRLYTSFSDIGLYSAAFKIVSAMSLLTTGFSTLWYPFAYEQYEKNPEDKMIFKRALDYMAFLVFSAGFLLLSFKDVIFLLLARSYRPAAAISPFLILNPVMITMAIVVARGIDFSKKTYWFIVSDGAAALFNLAGNFLLVPTLGAKGAAVSTGLSFIIVFAIESSVSKKLYPVPYDLKKVYCLVSLFVFSAVLHTFSQNLLLPVLSSVFGVFVTIFAYKSEFLKVVSIGVEFLKTTFHRK GT:EXON 1|1-479:0| BL:SWS:NREP 1 BL:SWS:REP 9->347|Y507_PASMU|1e-08|19.1|324/399| TM:NTM 14 TM:REGION 12->34| TM:REGION 43->65| TM:REGION 83->105| TM:REGION 111->133| TM:REGION 148->170| TM:REGION 178->200| TM:REGION 220->242| TM:REGION 249->271| TM:REGION 299->321| TM:REGION 330->352| TM:REGION 358->380| TM:REGION 385->406| TM:REGION 419->437| TM:REGION 443->464| SEG 85->104|ssvmppvllsillslvvfif| SEG 365->378|gaaalfnlagnfll| RP:PDB:NREP 1 RP:PDB:REP 279->334|3bleA|2e-04|12.5|56/307| RP:PFM:NREP 1 RP:PFM:REP 8->275|PF01943|7e-12|26.9|260/274|Polysacc_synt| HM:PFM:NREP 2 HM:PFM:REP 8->276|PF01943|4.1e-33|24.0|262/273|Polysacc_synt| HM:PFM:REP 339->369|PF08545|0.00018|25.8|31/80|ACP_syn_III| GO:PFM:NREP 2 GO:PFM GO:0000271|"GO:polysaccharide biosynthetic process"|PF01943|IPR002797| GO:PFM GO:0016020|"GO:membrane"|PF01943|IPR002797| OP:NHOMO 73 OP:NHOMOORG 69 OP:PATTERN ---------------------------------------1-----------1-------2-1------ ----------------------------------------------------------------------------------------11-111-------111-1---1-------------------------1-111------1-------------------------------------------1----------------------------1----------------------------------------------------------------------------1-----------------111--111------1111111---------1--1-------------1----------1-1-------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------1-----------11--1--------1-------------------1--1---------1------------------------------1---------11------------------------------1---------------------------------------------------------------------------------------------1-1-----------------------11-----------------------------1111-------1--------------------------------------------------------------1-32--1111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 56 STR:RPRED 11.7 SQ:SECSTR ######################################################################################################################################################################################################################################################################################TTcTTcHHHHHHHHHHHHTTcccEEEEEETTccTTHHHHHHHHHHHHHHTTcGGGE################################################################################################################################################# DISOP:02AL 1-3, 282-287, 478-479| PSIPRED ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc //