[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermotoga maritima MSB8 (tmar0)
Gene : AAD35706.1
DDBJ      :             lipopolysaccharide biosynthesis protein, putative
Swiss-Prot:             

Homologs  Archaea  64/68 : Bacteria  813/915 : Eukaryota  184/199 : Viruses  0/175   --->[See Alignment]
c.87.1
:388 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   150->361 2jjmA PDBj 1e-22 31.3 %
:RPS:PDB   3->362 3c48A PDBj 1e-49 19.6 %
:RPS:SCOP  4->362 2iv7A1  c.87.1.8 * 6e-46 18.4 %
:HMM:SCOP  1->380 2bisA1 c.87.1.8 * 7.2e-85 34.5 %
:RPS:PFM   46->176 PF09231 * RDV-p3 3e-04 28.7 %
:RPS:PFM   195->345 PF00534 * Glycos_transf_1 6e-35 48.0 %
:HMM:PFM   190->349 PF00534 * Glycos_transf_1 2.4e-49 46.9 160/172  
:HMM:PFM   18->69 PF01936 * DUF88 0.00089 32.7 49/146  
:BLT:SWISS 9->355 Y1607_METJA 3e-25 30.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAD35706.1 GT:GENE AAD35706.1 GT:PRODUCT lipopolysaccharide biosynthesis protein, putative GT:DATABASE GIB00025CH01 GT:ORG tmar0 GB:ACCESSION GIB00025CH01 GB:LOCATION complement(656140..657306) GB:FROM 656140 GB:TO 657306 GB:DIRECTION - GB:PRODUCT lipopolysaccharide biosynthesis protein, putative GB:NOTE similar to GP:2983976 percent identity: 57.73; identified by sequence similarity; putative GB:PROTEIN_ID AAD35706.1 GB:DB_XREF GI:4981142 LENGTH 388 SQ:AASEQ MIKVLHIIPSLAVGGAEKLVSDMVEFADRSRFDVAVMRITGTDSFLVEKLTSKGYQVYTIVLDYEAIAPSKVIRRLLRAIKNMRRTYNLLREIRPDIIHSHLSALRIALIPALLCRIPVKVHTIHTVAEKDAKGITRFFNRIAFKFFGFVPVSISQEVAESVKKLYGRKISTPVIYNGIDVQKFSIDQPKRVDRDKTILINVARLSREKNHALLVRAFSKAVQSCPNLELWLVGDGELRRDIEELVKQLGLEEKVKFFGVRSDVPELLSQADIFVLSSDYEGFGLVVAEAMAAGLPVIATAIGGIPEILEGGRAGILVPPKDVDALAKAIVELARDEKKRAELSDYGRKLVAERFDIRRTVREYEKLYLELLEKKKGSKKFRIKGNVL GT:EXON 1|1-388:0| BL:SWS:NREP 1 BL:SWS:REP 9->355|Y1607_METJA|3e-25|30.4|336/390| SEG 363->384|eyeklylellekkkgskkfrik| BL:PDB:NREP 1 BL:PDB:REP 150->361|2jjmA|1e-22|31.3|211/359| RP:PDB:NREP 1 RP:PDB:REP 3->362|3c48A|1e-49|19.6|357/399| RP:PFM:NREP 2 RP:PFM:REP 46->176|PF09231|3e-04|28.7|129/964|RDV-p3| RP:PFM:REP 195->345|PF00534|6e-35|48.0|150/165|Glycos_transf_1| HM:PFM:NREP 2 HM:PFM:REP 190->349|PF00534|2.4e-49|46.9|160/172|Glycos_transf_1| HM:PFM:REP 18->69|PF01936|0.00089|32.7|49/146|DUF88| GO:PFM:NREP 2 GO:PFM GO:0005198|"GO:structural molecule activity"|PF09231|IPR015312| GO:PFM GO:0009058|"GO:biosynthetic process"|PF00534|IPR001296| RP:SCP:NREP 1 RP:SCP:REP 4->362|2iv7A1|6e-46|18.4|343/370|c.87.1.8| HM:SCP:REP 1->380|2bisA1|7.2e-85|34.5|377/0|c.87.1.8|1/1|UDP-Glycosyltransferase/glycogen phosphorylase| OP:NHOMO 4370 OP:NHOMOORG 1061 OP:PATTERN 221-11336666464266222525B335694214523632325392F655ADF249258751--2-22 54D1753444442366744-49226544444395556868478852713223443432113764845B8965222311-131845334AB8E1B34---B2B6A648B64--------------1646744668A6MQQaU233O7RJEWFG821664454436A7BMPVA1443233553324742358342633434453445476458774855D66643521111119G35565674665556676534123423232369C44863723333313331222311433334332331111111111111133323333332-A6444445436421554B3434713725765384C17356425532-63B4341-----546444131123B11331233333-235434663641877446E774FD4431123314244235555555556643637----------112222222222222----334713788786547576222233HB43331253H6456-13425443212323-324722733223112378AAAB1BA869AD6A87884774693B89A599CCCA46756222233-1-------68245A61329B572A231-22212422222453-11---B469------22352352332231142-3223222234311222225333317643123232522343432523232215--11111111111--1132222122274GA313-4-2-111111-154335462226675574581144243233233333333-446622222542551311111---2222-18-662222-111-1115-2---1-----11--------------6533354552796 1122331-1-2-1112111133231221111112211111122-112122222223-21111111111-11111111-1111111111-241121111123-2322-11131832131-11121211312C2-235211-321311211112141122222-23211222542415212N1111-98GC2D71221223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 362 STR:RPRED 93.3 SQ:SECSTR HcEEEEEcTTcccccHHHHHHHHHHHHHHTTcEEEEEEEEEcccGGGccEEEEETTEEEEEEcccccccccGGGGGGGHHHHHHHHHHHHHHHTccccEEEEEHHHHHHHHHHHHHHHTcEEEccccHHcHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHHcccGGGEEEccccccTTTcccccHHTcccccEEEEEEccccGGGcHHHHHHHHHHHHHHcTTccEEEEEEcccccHHHHHHHHTTcTTTEEEEccHHHHHHHHHHccEEEEccccccccHHHHHHHHTTccEEEEccTTHHHHcccTTTEEEEccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHH########################## DISOP:02AL 372-382| PSIPRED ccEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEEEEccccccHHHHHHHcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHccccEEEEEEccccccHHHHHHHHHHHHHHHHHccEEEEccHHHHHHHHHHccccccEEEEcccccccccccccccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHHccccccEEEEccHHHHHHHHHHccEEEEccccccccHHHHHHHHccccEEEEcccccHHHHccccEEEEEccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccccccc //