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Thermotoga maritima MSB8 (tmar0)
Gene : AAD35811.1
DDBJ      :             (p)ppGpp synthetase
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  848/915 : Eukaryota  36/199 : Viruses  0/175   --->[See Alignment]
a.211.1b.55.1d.15.10d.218.1
:751 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   54->394 1vj7A PDBj 6e-81 49.7 %
:BLT:PDB   435->498 3hvzA PDBj 2e-19 60.3 %
:RPS:PDB   74->254 1a0cA PDBj 7e-23 12.8 %
:RPS:PDB   235->442 2be3A PDBj 7e-37 23.3 %
:RPS:PDB   425->497 2dwqA PDBj 5e-17 20.5 %
:RPS:PDB   612->749 3ddnB PDBj 3e-13 10.4 %
:RPS:SCOP  49->244 1vj7A1  a.211.1.1 * 6e-50 51.2 %
:RPS:SCOP  248->397 1vj7A2  d.218.1.8 * 3e-47 46.3 %
:RPS:SCOP  437->495 1nyqA2  d.15.10.1 * 6e-21 25.4 %
:RPS:SCOP  514->580 1k5dB  b.55.1.3 * 2e-06 25.4 %
:HMM:SCOP  48->245 1vj7A1 a.211.1.1 * 4.1e-67 50.0 %
:HMM:SCOP  234->441 2be3A1 d.218.1.8 * 4.8e-67 51.0 %
:HMM:SCOP  424->497 1wxqA2 d.15.10.2 * 5.8e-24 52.7 %
:RPS:PFM   289->397 PF04607 * RelA_SpoT 8e-36 64.5 %
:RPS:PFM   439->495 PF02824 * TGS 4e-14 50.9 %
:HMM:PFM   289->398 PF04607 * RelA_SpoT 1.3e-39 49.1 108/112  
:HMM:PFM   437->495 PF02824 * TGS 1.2e-26 45.8 59/60  
:HMM:PFM   94->197 PF01966 * HD 1.8e-13 30.9 94/118  
:BLT:SWISS 51->749 RELA_CORGL e-142 39.9 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAD35811.1 GT:GENE AAD35811.1 GT:PRODUCT (p)ppGpp synthetase GT:DATABASE GIB00025CH01 GT:ORG tmar0 GB:ACCESSION GIB00025CH01 GB:LOCATION 753153..755408 GB:FROM 753153 GB:TO 755408 GB:DIRECTION + GB:PRODUCT (p)ppGpp synthetase GB:NOTE similar to GP:2739435 percent identity: 64.47; identified by sequence similarity; putative GB:PROTEIN_ID AAD35811.1 GB:DB_XREF GI:4981255 LENGTH 751 SQ:AASEQ MCGNAHPRLMTAHDRIRLMLLSRVIIFSTEGEFGGEIVINRTEIETEAKVVIRELESLKKKSFTREEKKLLIKAYEFARIVHEGQKRFSGEPFITHPVEVTKILAGLGVDVTTLVAALLHDVVEDGENVSLDQIKKEFGPEVARIVDGVTKVSNINAPIGRDQDSRKKIETIQKMFFAMAEDMRVIFVKLADRLHNMRTIHYVQDPEKKRYKAYETLEIYAPLAHKLGIYSIKSELEDLAFKVLYPEEYYKIKELVAEKRKEREKRTNEYISLLKSALEEHKIKAIVEGRYKHYYSIWRKMKEKGKKFEEIYDLIALRVIVKDVTTCYTVLGIVHNIWKPLPGRFKDYIAAPKSNGYRSLHTTVITGYGEPLEIQIRDEEMHREAEYGLIAHWIYKERPDVKTAKEWIERLLDWRKELAQGFTEFEDIKKELQMDEVFVFTPKGDILHLPKGSTPIDFAYAIHTEIGHHYSGAKVNGKIVPIDYQLKNGDVVEIIVNKNSPGPSVDWLKYAKTHSARAKIRRFLKEKLAPELVERGKEVLRKICRKLGKSFEEVMQTEGIKRYLNTYQEKDFFMRIGEGSITTQDLIEAILGKKIVVKKRSTKKKTRIQNLVKVDGIDSIEFHIAKCCHPIMGDPIVAVVSRRGMTIHRRDCRNLKNMSQDRIFPAEWNLETSEMFDAHIRVVLNSEKNLPSLIDRITNLGAEFVAMKTLKSEEPLVVQIHIKISNTVELTGLLDRLRSYRYVLDAERVVQ GT:EXON 1|1-751:0| BL:SWS:NREP 1 BL:SWS:REP 51->749|RELA_CORGL|e-142|39.9|691/760| SEG 258->266|ekrkerekr| SEG 593->608|kkivvkkrstkkktri| BL:PDB:NREP 2 BL:PDB:REP 54->394|1vj7A|6e-81|49.7|314/326| BL:PDB:REP 435->498|3hvzA|2e-19|60.3|63/63| RP:PDB:NREP 4 RP:PDB:REP 74->254|1a0cA|7e-23|12.8|164/437| RP:PDB:REP 235->442|2be3A|7e-37|23.3|180/197| RP:PDB:REP 425->497|2dwqA|5e-17|20.5|73/354| RP:PDB:REP 612->749|3ddnB|3e-13|10.4|134/525| RP:PFM:NREP 2 RP:PFM:REP 289->397|PF04607|8e-36|64.5|107/112|RelA_SpoT| RP:PFM:REP 439->495|PF02824|4e-14|50.9|57/60|TGS| HM:PFM:NREP 3 HM:PFM:REP 289->398|PF04607|1.3e-39|49.1|108/112|RelA_SpoT| HM:PFM:REP 437->495|PF02824|1.2e-26|45.8|59/60|TGS| HM:PFM:REP 94->197|PF01966|1.8e-13|30.9|94/118|HD| GO:PFM:NREP 1 GO:PFM GO:0015969|"GO:guanosine tetraphosphate metabolic process"|PF04607|IPR007685| RP:SCP:NREP 4 RP:SCP:REP 49->244|1vj7A1|6e-50|51.2|170/172|a.211.1.1| RP:SCP:REP 248->397|1vj7A2|3e-47|46.3|149/154|d.218.1.8| RP:SCP:REP 437->495|1nyqA2|6e-21|25.4|59/59|d.15.10.1| RP:SCP:REP 514->580|1k5dB|2e-06|25.4|67/146|b.55.1.3| HM:SCP:REP 48->245|1vj7A1|4.1e-67|50.0|192/192|a.211.1.1|1/1|HD-domain/PDEase-like| HM:SCP:REP 234->441|2be3A1|4.8e-67|51.0|192/0|d.218.1.8|1/1|Nucleotidyltransferase| HM:SCP:REP 424->497|1wxqA2|5.8e-24|52.7|74/0|d.15.10.2|1/1|TGS-like| OP:NHOMO 1420 OP:NHOMOORG 885 OP:PATTERN -------------------------------------------------1------------------ 1211111111111111111-1111111111111111111112221111111111111111221111122211111111121111111122221222G--11111111111---------------1111111112111112111111113111111111111112111211111111111111111111111111111111222121211111111221111211222222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111-11111111-111111111111111111111111111111111-11111111111-1111111111111111111111111111111111111111211----------KM328952C52-114----1111112212222222222222222322222222222222222223222222222222222122222222211222211112111111111111111112111111132111111111111111111111111111222222223222222222222222222222--22222------22222222222222222-2212222222222222222222222222222222222232222222222222-222222222222--22222222222223222122222222222222222222222222222222222222222222222222222222222222223222232332222222112-1-111111111111--111111---1--11----111--1111111111111--- ------------111---------------------------------------------------------------------------------1-1---------8---111------------------------------------------12----3---11--11-14224V444439769-6424----5 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 586 STR:RPRED 78.0 SQ:SECSTR #####################################################HHHHHHHHHccHHHHHHHHHTTTEEEEEEHHHHHHTTccHHHHHHHHHHHHHHTTcEEEEEcccccTTcccccc#cccccHHHHHHHHHHHHHTTccccccccHcEEEEEEETTEEEEEEEcTTTTccccEEEEEEEccccccGGGTTHHHHTTHHHHGGGGcccEEEcccccccccccccHHHHEEHHHHHHHHHHHHHHHHHHHHcTTccccHHHHHHTHHHHTccccEEEEEEEEccHHHHHHHHHHTccTHHHcTTcEEEEEEccGGGHHHHHHHHHTcccEEEEHHEEETTTTccTTccccEEEEEEEEEEEEEEEEEEEcHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHTHHHTcccHHHHTHHHHHHHHHHcccccccEEEETTccHHHHHHHHccHHHHTEEEEEEEEEEEcTTccccTTEEEEEEEcccccc#############################################################################################################HHHHHTTTcEEEEEEEcccccccEEEEEEEETTccEEEEEEEEETTTTEEEEEEETTEEEEEEcccEEEEEEEEcccccTTHHHHHHHHTccEEEEEEEEcccccEEEEEEEEccccccHHHHHHHHHHHTccEEEEE## DISOP:02AL 1-5, 32-35, 158-168, 396-405, 421-422, 593-613| PSIPRED ccccccccEEccHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHHHcHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccHHHHHHHHHHccccHHHHHHHHEEEEEEccHHHHHHHHHHHHHHcccccccHHccccccccccccEEEEEEEccccEEEEEEEEEHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccEEEcccccEEEccccccHHHHHHHHcHHHHccEEEEEEccEEcccccccccccEEEEEEccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHccccHHcccccccccccEEEEccccccEEEcccccccccccEEEEEccccEEEEccccHHHHccccccEEEEEEccccccEEEEEEEEEEEcccHHHHHHHHHHHccccEEEEEEEccccEEEEEEEEEEccHHHHHHHHHHHHccccEEEEEEEcc //