[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermotoga maritima MSB8 (tmar0)
Gene : AAD35923.1
DDBJ      :             S-layer-like array protein
Swiss-Prot:             

Homologs  Archaea  9/68 : Bacteria  30/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.3.1b.3.2
:456 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   274->335 1jl2D PDBj 3e-04 42.1 %
:BLT:PDB   362->400 2q02C PDBj 4e-04 46.2 %
:RPS:SCOP  259->312 1h8lA1  b.3.2.1 * 1e-05 22.2 %
:RPS:SCOP  324->384 1h8lA1  b.3.2.1 * 3e-04 15.9 %
:HMM:SCOP  274->313 1nkgA1 b.3.1.2 * 4.6e-06 47.5 %
:RPS:PFM   181->242 PF08308 * PEGA 1e-05 46.9 %
:RPS:PFM   259->310 PF08308 * PEGA 7e-09 59.6 %
:RPS:PFM   315->378 PF08308 * PEGA 5e-05 39.1 %
:RPS:PFM   393->440 PF08308 * PEGA 1e-05 42.9 %
:HMM:PFM   180->244 PF08308 * PEGA 2.5e-22 47.7 65/71  
:HMM:PFM   247->314 PF08308 * PEGA 1.9e-24 48.5 68/71  
:HMM:PFM   315->384 PF08308 * PEGA 9.6e-17 41.8 67/71  
:HMM:PFM   389->447 PF08308 * PEGA 4.7e-22 35.6 59/71  
:BLT:SWISS 272->377 SUBF_BACSU 7e-05 30.2 %
:REPEAT 4|193->223|259->292|328->361|402->433
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAD35923.1 GT:GENE AAD35923.1 GT:PRODUCT S-layer-like array protein GT:DATABASE GIB00025CH01 GT:ORG tmar0 GB:ACCESSION GIB00025CH01 GB:LOCATION 867131..868501 GB:FROM 867131 GB:TO 868501 GB:DIRECTION + GB:PRODUCT S-layer-like array protein GB:NOTE similar to PID:993026 percent identity: 56.08; identified by sequence similarity; putative GB:PROTEIN_ID AAD35923.1 GB:DB_XREF GI:4981374 LENGTH 456 SQ:AASEQ MRRYVFLLLILVSMVAFSFEAKSIIIVPEKPYFTVDVWLNKPEGSVYEVGERIEIFVKSSRDAYILIYDINAQGKVTLIFPNKYESDNFVRANEIKKIPSKSTYSLRVSPPYGKEYIQVIASTRPIPIFNQLKELGTTRAFPTLSDNVEEYVQKKLKPYLTGEWVSDLTYFYVGRAPAFGTLIVDSTPPGMTVYIDGSYKGKTPVTVSVDEGTHYVTVYFENYTFYKEVYVGRNQTVKVIATLPLAQLSLSSSPSGASVYLNGVYQGKTPLTLNLSPGNYTVTFRKEGYREETRNITLSAGETRSVYVTLKPAQSSLKLRTDPSGVDVYIDGRYVGTTDQNGLNLILDPGMYEVKLEKEGYETDRFTVNLAPGEEKEIFRRLEKRVVFSEVRIETEPSGATIYLNGYYHGETPITLYVQAGTYEITIVKPGYRTIVKTITFDDEEEYFKFIMNRIE GT:EXON 1|1-456:0| BL:SWS:NREP 1 BL:SWS:REP 272->377|SUBF_BACSU|7e-05|30.2|106/100| NREPEAT 1 REPEAT 4|193->223|259->292|328->361|402->433| SEG 243->258|lplaqlslssspsgas| BL:PDB:NREP 2 BL:PDB:REP 274->335|1jl2D|3e-04|42.1|57/146| BL:PDB:REP 362->400|2q02C|4e-04|46.2|39/266| RP:PFM:NREP 4 RP:PFM:REP 181->242|PF08308|1e-05|46.9|62/71|PEGA| RP:PFM:REP 259->310|PF08308|7e-09|59.6|52/71|PEGA| RP:PFM:REP 315->378|PF08308|5e-05|39.1|62/71|PEGA| RP:PFM:REP 393->440|PF08308|1e-05|42.9|48/71|PEGA| HM:PFM:NREP 4 HM:PFM:REP 180->244|PF08308|2.5e-22|47.7|65/71|PEGA| HM:PFM:REP 247->314|PF08308|1.9e-24|48.5|68/71|PEGA| HM:PFM:REP 315->384|PF08308|9.6e-17|41.8|67/71|PEGA| HM:PFM:REP 389->447|PF08308|4.7e-22|35.6|59/71|PEGA| RP:SCP:NREP 2 RP:SCP:REP 259->312|1h8lA1|1e-05|22.2|54/79|b.3.2.1| RP:SCP:REP 324->384|1h8lA1|3e-04|15.9|61/79|b.3.2.1| HM:SCP:REP 274->313|1nkgA1|4.6e-06|47.5|40/0|b.3.1.2|1/3|Starch-binding domain-like| OP:NHOMO 72 OP:NHOMOORG 39 OP:PATTERN -------------------------------------------31117--1------A21-------- -2-----------------------------------------------------------------------------------111----------------------------------------------2------------------11----------------------------6431111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---------------------------------------------------1--111-----------------------------------------------------------------------------------------------------------------------------------------------------------------------12--------------------------------1---1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------21--11111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 96 STR:RPRED 21.1 SQ:SECSTR #################################################################################################################################################################################################################################################################################TTEEEEEEEEEEETT#####EEEEEEEEEEEEcHHHHHHHHHHHHTcccccEEEEEEccHHH##########################cGGGEEEEGcTTccHHHHHHHHHHTTccEEEEEccTTcc######################################################## DISOP:02AL 456-457| PSIPRED ccEEEEHHHHHHHHHcccccccEEEEccccccEEEEEEEEcccccEEccccEEEEEEEccccEEEEEEEEcccccEEEEEEcccccccEEcccccEEccccccEEEEEEccccccEEEEEEEcccccHHHHHHHHcccEEEEEEccccEEEEEcccccccccccccEEEEEEccccccEEEEEEEccccccEEEEccccEEEEEEEEEEccccEEEEEEEccccEEEEEEcccccEEEEEEEcccEEEEEEEEccccEEEEEEEEEEEEEEEEEcccccEEEEEEEccccEEEEEEEEccccEEEEEEEEEccccEEEEEEEccccEEEEccEEEEEccccccEEEEcccEEEEEEEEccccccEEEEEEEcccEEEEEEEEEEEcccccEEEEEcccccEEEEccEEEEEccEEEEEccccEEEEEEEccccccEEEEEEccccEEEEEEccccc //