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Thermotoga maritima MSB8 (tmar0)
Gene : AAD35938.1
DDBJ      :             tRNA pseudouridine 55 synthase
Swiss-Prot:TRUB_THEMA   RecName: Full=tRNA pseudouridine synthase B;         EC=5.4.99.-;AltName: Full=tRNA pseudouridine 55 synthase;         Short=Psi55 synthase;AltName: Full=tRNA-uridine isomerase;AltName: Full=tRNA pseudouridylate synthase;

Homologs  Archaea  52/68 : Bacteria  884/915 : Eukaryota  175/199 : Viruses  0/175   --->[See Alignment]
b.122.1d.265.1
:309 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->308 1ze1A PDBj e-158 99.0 %
:RPS:PDB   1->308 2ab4A PDBj 9e-43 89.0 %
:RPS:SCOP  1->228 1r3eA2  d.265.1.2 * 3e-41 92.5 %
:RPS:SCOP  229->309 1r3eA1  b.122.1.1 * 2e-11 81.8 %
:HMM:SCOP  1->228 1r3eA2 d.265.1.2 * 9.6e-74 41.2 %
:HMM:SCOP  229->309 1r3eA1 b.122.1.1 * 2.4e-16 37.0 %
:RPS:PFM   24->171 PF01509 * TruB_N 7e-28 41.9 %
:HMM:PFM   24->171 PF01509 * TruB_N 7.9e-53 44.6 148/149  
:HMM:PFM   230->292 PF01472 * PUA 2.2e-10 30.2 63/74  
:HMM:PFM   1->20 PF08068 * DKCLD 8.7e-06 50.0 20/59  
:BLT:SWISS 1->309 TRUB_THEMA e-160 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAD35938.1 GT:GENE AAD35938.1 GT:PRODUCT tRNA pseudouridine 55 synthase GT:DATABASE GIB00025CH01 GT:ORG tmar0 GB:ACCESSION GIB00025CH01 GB:LOCATION 881015..881944 GB:FROM 881015 GB:TO 881944 GB:DIRECTION + GB:PRODUCT tRNA pseudouridine 55 synthase GB:NOTE similar to GB:AE000657 percent identity: 61.45; identified by sequence similarity; putative GB:PROTEIN_ID AAD35938.1 GB:DB_XREF GI:4981390 LENGTH 309 SQ:AASEQ MKHGILVAYKPKGPTSHDVVDEVRKKLKTRKVGHGGTLDPFACGVLIIGVNQGTRILEFYKDLKKVYWVKMRLGLITETFDITGEVVEERECNVTEEEIREAIFSFVGEYDQVPPAYSAKKYKGERLYKLAREGKIINLPPKRVKIFKIWDVNIEGRDVSFRVEVSPGTYIRSLCMDIGYKLGCGATAVELVRESVGPHTIEESLNVFEAAPEEIENRIIPLEKCLEWLPRVVVHQESTKMILNGSQIHLEMLKEWDGFKKGEVVRVFNEEGRLLALAEAERNSSFLETLRKHERNERVLTLRKVFNTR GT:EXON 1|1-309:0| SW:ID TRUB_THEMA SW:DE RecName: Full=tRNA pseudouridine synthase B; EC=5.4.99.-;AltName: Full=tRNA pseudouridine 55 synthase; Short=Psi55 synthase;AltName: Full=tRNA-uridine isomerase;AltName: Full=tRNA pseudouridylate synthase; SW:GN Name=truB; OrderedLocusNames=TM_0856; SW:KW 3D-structure; Complete proteome; Isomerase; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->309|TRUB_THEMA|e-160|100.0|309/309| GO:SWS:NREP 2 GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| SEG 85->101|evveerecnvteeeire| SEG 270->282|eegrllalaeaer| BL:PDB:NREP 1 BL:PDB:REP 1->308|1ze1A|e-158|99.0|308/308| RP:PDB:NREP 1 RP:PDB:REP 1->308|2ab4A|9e-43|89.0|300/300| RP:PFM:NREP 1 RP:PFM:REP 24->171|PF01509|7e-28|41.9|148/149|TruB_N| HM:PFM:NREP 3 HM:PFM:REP 24->171|PF01509|7.9e-53|44.6|148/149|TruB_N| HM:PFM:REP 230->292|PF01472|2.2e-10|30.2|63/74|PUA| HM:PFM:REP 1->20|PF08068|8.7e-06|50.0|20/59|DKCLD| GO:PFM:NREP 1 GO:PFM GO:0006396|"GO:RNA processing"|PF01509|IPR002501| RP:SCP:NREP 2 RP:SCP:REP 1->228|1r3eA2|3e-41|92.5|228/228|d.265.1.2| RP:SCP:REP 229->309|1r3eA1|2e-11|81.8|77/77|b.122.1.1| HM:SCP:REP 1->228|1r3eA2|9.6e-74|41.2|228/228|d.265.1.2|1/1|Pseudouridine synthase| HM:SCP:REP 229->309|1r3eA1|2.4e-16|37.0|81/81|b.122.1.1|1/1|PUA domain-like| OP:NHOMO 1261 OP:NHOMOORG 1111 OP:PATTERN 1-1--1111111111--1111-11--------11111111111111-1111111111111111111-1 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111-11--111111111-1-1111111-111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111-11111111111111111111111111111111111111111111111111111111111111111111---1-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111-1-------1111111111111111111111111111111-111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111-1111111-111111-111111-111111111111111111 23--122-511-111-122---1-1-111111111--11111111111111111111-111112111-12-11211111121111112-2121222111112221312412231-232222222311225F2-4342111312221222-3112223221342--215---11212132H1112133432222222222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 309 STR:RPRED 100.0 SQ:SECSTR cccEEEEEEEcccccHHHHHHHHHHHTTcccEEEcccccTTcEEEEEEEEGGGGGGGGGGTTccEEEEEEEEETEEETTccTTccEEEEccccccHHHHHHHHHTTcEEEEEccccccccccccccHHHHHHTTcccccccEEEEEEEEEEEEEETTEEEEEEEEcTTccHHHHHHHHHHHHTccEEEEEEEEEEETTEETTTcccTTTccHHHHHHHcEEGGGccTTccEEEEcTTTHHHHTTcccEETTTcccccccccccEEEEEETTccccEEEEEccccccHHHHHHHTcccEEEEEEEEcccc PSIPRED cccEEEEEEccccccHHHHHHHHHHHHccccEEEcccccHHHcccEEEEEccHHHHHHHHHcccEEEEEEEEEEEEEccccccccEEEEccccccHHHHHHHHHHHcccEEEccccEEEEEEccHHHHHHHHcccEEEccccEEEEEEEEEEEEcccEEEEEEEEccccHHHHHHHHHHHHccccEEEEEEEEEEEccccHHHHccHHHccHHHHHHHcccHHHHHHcccEEEEcHHHHHHHHcccEEcccccccccccccccEEEEEcccccEEEEEEEEccccEEEEEEccccccEEEEEccccccc //