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Thermotoga maritima MSB8 (tmar0)
Gene : AAD35942.1
DDBJ      :             protein-export membrane protein SecD, putative
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  752/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
f.35.1
:465 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   111->159 1aopA PDBj 9e-04 22.4 %
:RPS:SCOP  289->449 1iwgA7  f.35.1.1 * 1e-15 15.5 %
:HMM:SCOP  77->453 1iwgA8 f.35.1.1 * 1.1e-37 31.5 %
:RPS:PFM   270->444 PF02355 * SecD_SecF 5e-25 36.6 %
:HMM:PFM   279->436 PF02355 * SecD_SecF 1.8e-21 26.9 156/189  
:HMM:PFM   24->55 PF07549 * Sec_GG 8.2e-08 40.7 27/29  
:BLT:SWISS 61->447 SECD_AQUAE 6e-49 36.8 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAD35942.1 GT:GENE AAD35942.1 GT:PRODUCT protein-export membrane protein SecD, putative GT:DATABASE GIB00025CH01 GT:ORG tmar0 GB:ACCESSION GIB00025CH01 GB:LOCATION 883686..885083 GB:FROM 883686 GB:TO 885083 GB:DIRECTION + GB:PRODUCT protein-export membrane protein SecD, putative GB:NOTE similar to GB:AE000657 percent identity: 61.17; identified by sequence similarity; putative GB:PROTEIN_ID AAD35942.1 GB:DB_XREF GI:4981394 LENGTH 465 SQ:AASEQ MRGDRVRLIVVLLVLAGALLAIFWPSKGGWISNIRLGLDIKGGARIEYMVEVQQGTENPSDVVDDVWTVLRNRLDAAGYTEAAVKKVLRDNKYYIVVEIPGATDTVQAEKLIGSTGVLYFAQVLDEYLGEDPSKVPELSLEARRENAVWLKGRDGKWYLVKKEIMGRKDLVLEAPRIVYARPEVETRTGRYGYKVSFELAKEYVDIFKKITQALYVPEGTYDPKKRLAIVLDDVVQFVGQVVAIITDGKAEITGNFSLEEAKQLAAILRSGALPARLVKTSSGWVAPLLGRDVIDASLKAGIIGLILVLVYMIIYYRTMGIVADLALIYNTVLLLGVMAAGKFILTLPGIAGIILTIGTTVDGNVIIYERIKEEMRLGKPVKTSIAAGFDRSLSTILDANITTILTGLILYYFGTGTIKGFAITLIIGVLGSIFVNLVFSRLLLDALARFIKPLRADEAQGGTGQ GT:EXON 1|1-465:0| BL:SWS:NREP 1 BL:SWS:REP 61->447|SECD_AQUAE|6e-49|36.8|359/501| TM:NTM 5 TM:REGION 7->29| TM:REGION 296->318| TM:REGION 329->351| TM:REGION 394->416| TM:REGION 426->448| SEG 8->22|livvllvlagallai| SEG 344->360|iltlpgiagiiltigtt| RP:PDB:NREP 1 RP:PDB:REP 111->159|1aopA|9e-04|22.4|49/456| RP:PFM:NREP 1 RP:PFM:REP 270->444|PF02355|5e-25|36.6|175/185|SecD_SecF| HM:PFM:NREP 2 HM:PFM:REP 279->436|PF02355|1.8e-21|26.9|156/189|SecD_SecF| HM:PFM:REP 24->55|PF07549|8.2e-08|40.7|27/29|Sec_GG| GO:PFM:NREP 3 GO:PFM GO:0008565|"GO:protein transporter activity"|PF02355|IPR003335| GO:PFM GO:0015627|"GO:type II protein secretion system complex"|PF02355|IPR003335| GO:PFM GO:0015628|"GO:protein secretion by the type II secretion system"|PF02355|IPR003335| RP:SCP:NREP 1 RP:SCP:REP 289->449|1iwgA7|1e-15|15.5|161/199|f.35.1.1| HM:SCP:REP 77->453|1iwgA8|1.1e-37|31.5|216/223|f.35.1.1|1/1|Multidrug efflux transporter AcrB transmembrane domain| OP:NHOMO 839 OP:NHOMOORG 754 OP:PATTERN -----------------------------------------------------------1-------- 111-1111---1-11---------------------111111111111111111111111111-2---121--------111111111111111111--111111111111111111111111111-1111111111111111111211111112111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111-1111----------------------------------------------------------------------11-1111111111112-111111111--1111111111121111111-11111111111111111111111111111111111122-11111111111121122212222211121111111111111111111-1-1112211111111112212111111111111111111111111111111111----1111------111111111111111111111121111111111111111111111111111111111111211111121111112111111122222111111111111111112212111122122222122222212222221-11111------11112111111111111-1111111111111111111111111111111111111111111111111111-211111111111111122222111111111111111111-11111111111111111111111111111111112222222221122222222223221111111111111111111111111111111111----------11---------11---1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 49 STR:RPRED 10.5 SQ:SECSTR ##############################################################################################################HHHHHcHHHHHHHHHHHHTccccccccccccccccccEEEEccTTEEEE################################################################################################################################################################################################################################################################################################################## DISOP:02AL 1-3, 131-146, 245-265, 453-465| PSIPRED cccccEEHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEccccccEEEEEEcccccHHHHHHHHccccEEEEEEEccccccccHHHHccccccccccccEEEEccccccEEEEEEEEccccEEEccccccccccEEEEcccccccEEEEEEccHHHHHHHHHHHHHHHHccccccccEEEEEEccEEEEccccHHccccccEEEEEcccHHHHHHHHHHHHHccccccEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEcHHHHHHHHHHHHHHHccEEEEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccc //