[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Thermotoga maritima MSB8 (tmar0)
Gene : AAD36292.1
DDBJ      :             glutamate synthase, beta subunit
Swiss-Prot:             

Homologs  Archaea  46/68 : Bacteria  680/915 : Eukaryota  171/199 : Viruses  0/175   --->[See Alignment]
a.1.2c.2.1c.4.1d.58.1
:618 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->134 2fug9 PDBj 7e-08 38.1 %
:BLT:PDB   179->610 2vdcG PDBj 4e-38 30.0 %
:RPS:PDB   52->114 1dwlA PDBj 1e-09 18.5 %
:RPS:PDB   189->478 2dw4A PDBj 9e-42 14.7 %
:RPS:PDB   500->614 1e6eC PDBj 2e-08 14.4 %
:RPS:SCOP  38->139 2fug91  d.58.1.5 * 1e-13 28.4 %
:RPS:SCOP  161->277 1nekB1  a.1.2.1 * 2e-12 14.7 %
:RPS:SCOP  293->450 1gt8A4  c.4.1.1 * 4e-29 27.8 %
:RPS:SCOP  431->593 1f8gA1  c.2.1.4 * 1e-10 12.3 %
:HMM:SCOP  43->140 2fug91 d.58.1.5 * 3.1e-25 36.7 %
:HMM:SCOP  164->307 1h7wA1 a.1.2.2 * 5e-33 44.1 %
:HMM:SCOP  295->549 1lqtA2 c.4.1.1 * 4.5e-58 40.9 %
:HMM:SCOP  510->603 1djnA3 c.4.1.1 * 2.5e-08 35.4 %
:RPS:PFM   50->72 PF00037 * Fer4 6e-05 60.9 %
:RPS:PFM   299->593 PF07992 * Pyr_redox_2 1e-18 38.3 %
:HMM:PFM   300->594 PF07992 * Pyr_redox_2 2.9e-28 37.2 183/202  
:HMM:PFM   52->72 PF00037 * Fer4 3e-11 57.1 21/24  
:HMM:PFM   90->111 PF00037 * Fer4 3.9e-06 40.9 22/24  
:BLT:SWISS 22->131 NUOI1_GEOSL 7e-16 39.3 %
:BLT:SWISS 160->614 GLTD_ECOLI 1e-51 33.2 %
:PROS 56->67|PS00198|4FE4S_FER_1
:PROS 200->211|PS00198|4FE4S_FER_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAD36292.1 GT:GENE AAD36292.1 GT:PRODUCT glutamate synthase, beta subunit GT:DATABASE GIB00025CH01 GT:ORG tmar0 GB:ACCESSION GIB00025CH01 GB:LOCATION 1239324..1241180 GB:FROM 1239324 GB:TO 1241180 GB:DIRECTION + GB:PRODUCT glutamate synthase, beta subunit GB:NOTE similar to PID:2244618 percent identity: 58.52; identified by sequence similarity; putative GB:PROTEIN_ID AAD36292.1 GB:DB_XREF GI:4981770 LENGTH 618 SQ:AASEQ MRKMAVQKLPEKDFFAPLKAWKFLVRKPVTIEVPNKIRREASERYRGFHVNDWGKCIGCGTCAKICPTDAITMVEVPDLTQEDGKLPQRPVIDYGRCSFCALCVDICTTGSLKMTREYIHISEDPEDFIFMPTDKGLNAKKGLYEFGKAPLGWVRDENSELLDLERIEMPVEPPEVRIKSFIEIVKGYSREQAMQEAARCVECGVCTYTCPEHMDIPQYIKSVYEDNLEEGLRWLYRTNPLSMVCGRVCTHRCETACSVGVRGEPVAIQWLKRYIVDSIPLERYGEILDIKPERKGKSVGIIGSGPAGLAAAYFLATMGYDVTIYESESKPGGVMRYGIPKYRLPDEALDKDIAFIEALGVKILLNTRVVQDVSFEDVRKRHDVVFLATGFGLGRSTGVPGTDHPDVKQALPLLKMIRDYLRGDGPKPPVPERLVVIGGGNVAMDISRSMARLQFMEYGRVNVQVLSLEGCFEDMPADMEEIEEALEEGIVINPGWGPMEVVIENDRIKGVKFKKCVSVFDGEGRFNPQFDEKEQIFVEADMVVEAIGQAPDYSYLPEEIRSKLEFFRGRIKTNEYNQTSVEWLFAGGDIVHGPDIIHGIADGYAAAKGIDMYLRKEK GT:EXON 1|1-618:0| BL:SWS:NREP 2 BL:SWS:REP 22->131|NUOI1_GEOSL|7e-16|39.3|107/132| BL:SWS:REP 160->614|GLTD_ECOLI|1e-51|33.2|446/472| PROS 56->67|PS00198|4FE4S_FER_1|PDOC00176| PROS 200->211|PS00198|4FE4S_FER_1|PDOC00176| SEG 480->488|eeieealee| BL:PDB:NREP 2 BL:PDB:REP 44->134|2fug9|7e-08|38.1|84/154| BL:PDB:REP 179->610|2vdcG|4e-38|30.0|423/456| RP:PDB:NREP 3 RP:PDB:REP 52->114|1dwlA|1e-09|18.5|54/59| RP:PDB:REP 189->478|2dw4A|9e-42|14.7|273/634| RP:PDB:REP 500->614|1e6eC|2e-08|14.4|111/456| RP:PFM:NREP 2 RP:PFM:REP 50->72|PF00037|6e-05|60.9|23/24|Fer4| RP:PFM:REP 299->593|PF07992|1e-18|38.3|261/275|Pyr_redox_2| HM:PFM:NREP 3 HM:PFM:REP 300->594|PF07992|2.9e-28|37.2|183/202|Pyr_redox_2| HM:PFM:REP 52->72|PF00037|3e-11|57.1|21/24|Fer4| HM:PFM:REP 90->111|PF00037|3.9e-06|40.9|22/24|Fer4| GO:PFM:NREP 2 GO:PFM GO:0009055|"GO:electron carrier activity"|PF00037|IPR001450| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF00037|IPR001450| RP:SCP:NREP 4 RP:SCP:REP 38->139|2fug91|1e-13|28.4|102/154|d.58.1.5| RP:SCP:REP 161->277|1nekB1|2e-12|14.7|116/132|a.1.2.1| RP:SCP:REP 293->450|1gt8A4|4e-29|27.8|151/196|c.4.1.1| RP:SCP:REP 431->593|1f8gA1|1e-10|12.3|130/181|c.2.1.4| HM:SCP:REP 43->140|2fug91|3.1e-25|36.7|98/0|d.58.1.5|1/2|4Fe-4S ferredoxins| HM:SCP:REP 164->307|1h7wA1|5e-33|44.1|136/182|a.1.2.2|2/2|alpha-helical ferredoxin| HM:SCP:REP 295->549|1lqtA2|4.5e-58|40.9|230/0|c.4.1.1|1/1|Nucleotide-binding domain| HM:SCP:REP 510->603|1djnA3|2.5e-08|35.4|79/234|c.4.1.1|2/2|Nucleotide-binding domain| OP:NHOMO 1860 OP:NHOMOORG 897 OP:PATTERN 225-2211111111113222222-----121-------------121122222-45497831213--1 12321-1122211-53322-24223422222244444775332322-1122231211211224231434422222222212321111111222211-----211122111---------------45444434424---113331121211121111111111121111-1121111121111123--112-211111111211111112111111-1221-11111111122-11111111111111111112---11-------1111----1-111--------11----------------------------------122275555555657112212233221-15251754441121512611--2211113-----122231114322422222222222-11111111221-2112333222331121232122223323333333312211312-----------------------------111311111112333321222233222222123221211-122121222421522113211112----------411-9B443442464411445344577444413271--1-11111----------2322211322121212111222222522222222254---1232------22323215555555555-555554555555545555322243111323333333333333323233333--122222222222---1---------22112---1-1-----1---11111111111122322332122221111---------123352222234233112121122211112232111111--------31--------------------------323222122111- 11--112-1--111111221111111111-11111112222222111111111111111111221111--1-11111-1111112121-111111111111112121222411111--11--111211-271-2211-11--11-111-11111-211-1362522162333331-111G---1143262122122111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 607 STR:RPRED 98.2 SQ:SECSTR ###########HHHHHHHHHHHHHHHHHTTcTTcHHHHHHHHHHHHHHHHHcccccccccGGGGTcTTTEEEEEcTTGGGTccEcccEEEccTTcHHHHHHHHHHHHHHHHTTTcEEEEEEEccccccTTcccTTTHHHHHHHHHTccEETTccEEEEEccccTTcccTTGGGTcccTTTccTTTTHHcHHHHHHHHTTcTTcccHHHHcHHHHTccHHHHHHHHcHHHHHHHHHHHHcTTccccHcccHHHHHHHccTTGGGcHHHHHHHHHHHHHTTcHcccccccccccccccccccEEcccHHHHHHHHHHHHTTcEEEEEcccccccTTccEHHHHEEETTEEEEccccEEccccTcHHHHHHHHHTccEEEccccccEEcTTcccccHHHHHHHHHHHHHHHHHHHHHHHTccccEETTEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEccHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHHTTcEEETTEEEEEEEEccccEEEEEEEccTTcccEEEEEEEEEcEEEEcccEEEccTTccGGGGTccccTTccccccTTcccccTTEEEcGGGGcccccHHHHHHHHHHHHHHHcccTTcc DISOP:02AL 1-6, 160-172| PSIPRED cccEEEEEccHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccccccHHHHHcccccEEEEEcccccccccccccEEEEEcccccccccHHHHccccEEEEccccccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHcccccccccccccHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccccHHHHHHHHcccHHHHHHHHHHcccccHHHHHHcHHHHcHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccEEEEEcccHHHHHHHHHHHHccccEEEEEcccccccEEEEcccccccHHHHHHHHHHHHHHcccEEEEccEEEEEEcHHHHHHHccEEEEEccEEccccccccccccccEEEHHHHHHHHHHHHHHcccccccccEEEEEccccHHHHHHHHHHHHHHHHEEEEEEEEEEccccHHHccccHHHHHHHHHcccEEEEcccEEEEEEcccEEEEEEEEEEEEEEcccccEEEEEccccEEEEEEcEEEEEEEEEccHHHHHHHcccEEEccccEEEEcccEEcccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHccc //