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Thermotoga maritima MSB8 (tmar0)
Gene : AAD36615.1
DDBJ      :             lipopolysaccharide biosynthesis protein
Swiss-Prot:             

Homologs  Archaea  38/68 : Bacteria  536/915 : Eukaryota  37/199 : Viruses  1/175   --->[See Alignment]
c.2.1
:605 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   270->539 2gn4B PDBj 3e-37 35.3 %
:RPS:PDB   135->212 3e82E PDBj 5e-05 24.0 %
:RPS:PDB   200->533 1e2uA PDBj 1e-29 12.6 %
:RPS:SCOP  134->224 1xcbA2  c.2.1.12 * 4e-07 18.2 %
:RPS:SCOP  274->481 1vl0A  c.2.1.2 * 4e-30 26.8 %
:HMM:SCOP  131->264 1xcbA2 c.2.1.12 * 1.2e-22 32.5 %
:HMM:SCOP  272->535 1gy8A_ c.2.1.2 * 1.3e-53 33.5 %
:RPS:PFM   131->175 PF01564 * Spermine_synth 3e-05 46.5 %
:RPS:PFM   275->555 PF02719 * Polysacc_synt_2 3e-86 57.3 %
:HMM:PFM   275->557 PF02719 * Polysacc_synt_2 1.9e-113 53.7 283/296  
:HMM:PFM   133->208 PF02629 * CoA_binding 1.1e-09 31.9 72/96  
:BLT:SWISS 50->544 EPSC_BACSU 3e-99 44.1 %
:TM

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAD36615.1 GT:GENE AAD36615.1 GT:PRODUCT lipopolysaccharide biosynthesis protein GT:DATABASE GIB00025CH01 GT:ORG tmar0 GB:ACCESSION GIB00025CH01 GB:LOCATION 1541839..1543656 GB:FROM 1541839 GB:TO 1543656 GB:DIRECTION + GB:PRODUCT lipopolysaccharide biosynthesis protein GB:NOTE similar to GP:1773343 percent identity: 61.19; identified by sequence similarity; putative GB:PROTEIN_ID AAD36615.1 GB:DB_XREF GI:4982116 LENGTH 605 SQ:AASEQ MVRKALLFVIDVALTYFAGVVALFSRFGFDFQEMSRYDESVIVYTVISAVVYILNGNYSIVWEYANARDFLILIRGSVISYLSNLAFFYVYRGIVLPRSVGFAVFLGSMVLLVLSRITWQWMIVNGRGKVPGEKRILIIGAGDAGVSILEEFEKHPHLGKIVAFVDDSPRKIGRKVRGVPVFGPIEKTMEFVEKMNVDEIVIAIPSASRAEMERILKSIDLKKVRVKTLPSVRELIEGRVRISHLKEISIEDLLGREEVKVDFHEIGKFLKGKKILVTGAGGSIGSELCKQIARMNPAEIFLLGHGETSIYLINEFLTEHFPEVKKKRIIADVADRKIMEHWLTQLRPDVIFHVAAHKHVPLMEENPLEAFRVNVLGTMNLVELSERLGVKYFVFISTDKAVNPTSVMGLTKRIAELYILSREKNSTNFSIVRFGNVLGSRGSVVEKFRRQIEKGGPVTVTDPRMKRYFMSIPEAVSLILQSLLFSSGKDLFILDMGEQIPILKLAETMIMLSGYTPYQDIKIVFTGIRPGEKMYEELLYPYEVKELTPHSKIFRVKTSVLPGKESVEQAINRMKEAFENSDVKGLLTEMKKLVPEAQINVGSDN GT:EXON 1|1-605:0| BL:SWS:NREP 1 BL:SWS:REP 50->544|EPSC_BACSU|3e-99|44.1|488/598| TM:NTM 4 TM:REGION 5->27| TM:REGION 38->60| TM:REGION 67->89| TM:REGION 97->119| BL:PDB:NREP 1 BL:PDB:REP 270->539|2gn4B|3e-37|35.3|255/327| RP:PDB:NREP 2 RP:PDB:REP 135->212|3e82E|5e-05|24.0|75/339| RP:PDB:REP 200->533|1e2uA|1e-29|12.6|317/552| RP:PFM:NREP 2 RP:PFM:REP 131->175|PF01564|3e-05|46.5|43/226|Spermine_synth| RP:PFM:REP 275->555|PF02719|3e-86|57.3|281/291|Polysacc_synt_2| HM:PFM:NREP 2 HM:PFM:REP 275->557|PF02719|1.9e-113|53.7|283/296|Polysacc_synt_2| HM:PFM:REP 133->208|PF02629|1.1e-09|31.9|72/96|CoA_binding| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF01564|IPR001045| GO:PFM GO:0009058|"GO:biosynthetic process"|PF02719|IPR003869| RP:SCP:NREP 2 RP:SCP:REP 134->224|1xcbA2|4e-07|18.2|88/126|c.2.1.12| RP:SCP:REP 274->481|1vl0A|4e-30|26.8|179/281|c.2.1.2| HM:SCP:REP 131->264|1xcbA2|1.2e-22|32.5|126/0|c.2.1.12|1/2|NAD(P)-binding Rossmann-fold domains| HM:SCP:REP 272->535|1gy8A_|1.3e-53|33.5|260/383|c.2.1.2|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 956 OP:NHOMOORG 612 OP:PATTERN --1-------------1-11---11--1---111212112113-11121124112111131---1--4 -21-1--111-------------------------------111---2---1---1-2--1-1--1----1--------22-21--216534-8-----12122121222--------------1----11-122-13332----12--1--12-1111-1-1------3--211111-21-21----11---4-----21-112-12-123322-13-1-2122------231222222221222212--21------------------1--------------1--22212221211-------------1--------11112344434442421133211-22311-1222223215131---1112--1-2222-------11132-1121222222222222-2112122221--1---12233211--2221-21111---1111111111111212------------1111111111111-----1-11-111131111111111111121111111111111--31211-1--21111222111111111111111151222221111-1311-12422214211-213-222222222221211111111112211--22-13-2231222--33-11-111221223---23-2------1-11------------------------------------1-21-1111111111-1111--------1----11111-1111---------1111111-2---1-1-----1--2111-1111111121212322312221211211111111-33221111112123122121111122221-21222244--------112-------------------------2132222222--1 ------------25-------1------------------------------------1111-----------------------------------------1---------11-2----1-111-1-111-11--------1------1----1111----1---------2------------234-1-111--2- -----------------------1------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 476 STR:RPRED 78.7 SQ:SECSTR #####################################################################################################################HHHHHHccc###cTTccccEEEEcccHHHHHHHHTTccTHHHHHHHHHTccHHHcEEccETcEEEEEHHHHHHHHHHHHHTTHHHHHHHHHTTcccHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEccHcccccEEEEEcccHHHHHHHHHHHTTTTcEEEEcGGGGGGGGcHHHHTcGGHHHHHHHHcccEEEcccccccccTTcccGGGEEEcETTcccTTcEEEccccTTcccccHHHHHHHTTccccccccccEEEEcccHHHHHHTHHHHHHHHHHTccccccEEEEcccccccGGGHHHHHHHHHHccTTEEEEEccGGGGGTTTccccEEHHHHHTTccccTTEEcEEEcccGGGHHHHHHHHHHHTTcccGGGccEEEEEEcccHHTTcccEEcccEEEEEEcTTcccccEEEcTTcccTTccEHHHHHHHHHHHTTTccTcccccccc######### DISOP:02AL 600-605| PSIPRED cHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEccHHHHHHHHHHHHccccccEEEEEEccHHHHccEEccEEccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHccccEEEcccHHHHHccccccccccccccccccccccccccHHHHHHHHcccEEEEEcccccHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHccccEEEccccEEEEEEEHHHHHHHHHHHHHccccccEEEEcccccEEHHHHHHHHHHHHcccccccccEEEcccccccHHHHHHcccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccccccc //